BS32979.complete Sequence
1298 bp assembled on 2014-01-22
GenBank Submission: KX801226
> BS32979.complete
GAAGTTATCAGTCGACATGGATTGGCCAGATTGTCCCCCTAGGCCACTGA
GGGTAAAAATATTCCAAATTCAATTAAAAGCACTGCACTGCACTGACTAC
AACCATGAAGTTCAGCCACCAGAGCCCAACAGTCTGGGAACAAAGGTCCG
CCAGAAGACCAAGGCGCAGCAGCAGCAGCAGCAACAGCAGCACACGCTCC
AGGAGACCCGGAGCTACTGCACCAGTGAGCCCCGGCTGAGCGAGACGGAG
ACGCCTCCGCAGCGCCGCAAGCTATCGCAGCGGAGGCCACAGACGCACGC
ACACAGAAAATCAAACGCCTTCCTGGACGTGCCCACCATGAACATGCATC
ACCTGCGCGTCAACGACGACGACGAGGATGTGGACAGATTGCGCACTTTC
AGCGCCTCCAAGGGAGGTATCATCAATCGAGGTGACTCCTTCCGTCGCCG
GCGCTCGAGGAGCAACAGCCTGGCTCCATCCAGTCCCATGCACACACGCA
ATGGTGTGGGCGGCCTGGGTGGCGTGGCCGGGGGCGGAAGCAGCCTGGGA
CTGGGTTGTGGCTACAATGGCGGCAGCAGCAGCAACGGATTCGGAAATGC
CAATGCCCAGGAGAACCATCAGCCGGTGGAATTCTATCGCGTCGAAATGC
TTGGATCCGCGGGAGTCGGCAAACAGGCTTTGCTTTCGCAATTCCGCACC
TCGGACTGCATCAATGCCTACGATGGACCTGAATGCGACGATGCCGAGCA
GAACGTCTCAATCATCTTGAATGGCACCGAATCGGAACTGAAGTTCCTCA
CTGGAAATCCAGAGAGCAAGGATGAACTGGAGCAGGCGGATGCCTTTCTG
GTGGTCTACTCCTGCATTGACAAGGAGTCCTTCACGCGGGCCAAGCAGAT
ACTATCGCGACTGCAGGACATGGACCTGCTGCGCCATCGACCCACCATCC
TGGTGGCCAACAAAATTGATTTGGCCCGCTCACGCGCCGTTTCCGCCCAG
GATGGCAAATGCGTGGCCTGCACGTTTGGAGCCAAGTTTATCGAGGTCTC
CGTGGGCATCAATCACAACTGCGACGAGCTCCTGGCCGGCACGCTCACCC
AGATTCGCCTCAAGAAGGACCAAGTTCAGTTGCAGGGACCAAGGGACGCC
AATTCGCCGGCGCATTGGTACAAAAGCCGCAGCGTGATGCTGGCCAGCAT
GAAGGCCCGCCAGATGCTCACCTGGATCCTGGGCAAGGAGGACTCCAAGT
TCAAGCACTGCGAGAATCTGCAGGTGCTCTAAAAGCTTTCTAGACCAT
BS32979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgk3-RG | 1350 | CG34397-PG | 213..1350 | 145..1282 | 5690 | 100 | Plus |
| Rgk3-RF | 1350 | CG34397-PF | 213..1350 | 145..1282 | 5690 | 100 | Plus |
| Rgk3-RC | 1350 | CG34397-PC | 213..1350 | 145..1282 | 5690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgk3-RG | 3293 | CG34397-RG | 1728..2868 | 145..1285 | 5705 | 100 | Plus |
| Rgk3-RF | 3795 | CG34397-RF | 1608..2748 | 145..1285 | 5705 | 100 | Plus |
| Rgk3-RC | 2540 | CG34397-RC | 975..2115 | 145..1285 | 5705 | 100 | Plus |
| Rgk3-RG | 3293 | CG34397-RG | 1127..1259 | 13..145 | 650 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21276145..21276461 | 415..731 | 1585 | 100 | Plus |
| 2R | 25286936 | 2R | 21278393..21278575 | 819..1001 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 21270759..21270914 | 144..299 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 21279796..21279948 | 1133..1285 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 21278691..21278826 | 1001..1136 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 21257879..21258013 | 13..147 | 660 | 99.3 | Plus |
| 2R | 25286936 | 2R | 21272169..21272288 | 299..418 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 21276517..21276607 | 731..821 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:47:14 has no hits.
BS32979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:05:04 Download gff for
BS32979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk3-RD | 1131..2394 | 17..1280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:22:57 Download gff for
BS32979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk3-RC | 975..2110 | 145..1280 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:22:57 Download gff for
BS32979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21257883..21258011 | 17..145 | 100 | -> | Plus |
| 2R | 21270761..21270914 | 146..299 | 100 | -> | Plus |
| 2R | 21272170..21272286 | 300..416 | 100 | -> | Plus |
| 2R | 21276147..21276461 | 417..731 | 100 | -> | Plus |
| 2R | 21276518..21276606 | 732..820 | 100 | -> | Plus |
| 2R | 21278395..21278575 | 821..1001 | 100 | -> | Plus |
| 2R | 21278692..21278825 | 1002..1135 | 100 | -> | Plus |
| 2R | 21279799..21279943 | 1136..1280 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:05:04 Download gff for
BS32979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17159675..17159791 | 300..416 | 100 | -> | Plus |
| arm_2R | 17145388..17145516 | 17..145 | 100 | -> | Plus |
| arm_2R | 17158266..17158419 | 146..299 | 100 | -> | Plus |
| arm_2R | 17163652..17163966 | 417..731 | 100 | -> | Plus |
| arm_2R | 17164023..17164111 | 732..820 | 100 | -> | Plus |
| arm_2R | 17165900..17166080 | 821..1001 | 100 | -> | Plus |
| arm_2R | 17166197..17166330 | 1002..1135 | 100 | -> | Plus |
| arm_2R | 17167304..17167448 | 1136..1280 | 100 | | Plus |
BS32979.pep Sequence
Translation from 16 to 1281
> BS32979.pep
MDWPDCPPRPLRVKIFQIQLKALHCTDYNHEVQPPEPNSLGTKVRQKTKA
QQQQQQQQHTLQETRSYCTSEPRLSETETPPQRRKLSQRRPQTHAHRKSN
AFLDVPTMNMHHLRVNDDDEDVDRLRTFSASKGGIINRGDSFRRRRSRSN
SLAPSSPMHTRNGVGGLGGVAGGGSSLGLGCGYNGGSSSNGFGNANAQEN
HQPVEFYRVEMLGSAGVGKQALLSQFRTSDCINAYDGPECDDAEQNVSII
LNGTESELKFLTGNPESKDELEQADAFLVVYSCIDKESFTRAKQILSRLQ
DMDLLRHRPTILVANKIDLARSRAVSAQDGKCVACTFGAKFIEVSVGINH
NCDELLAGTLTQIRLKKDQVQLQGPRDANSPAHWYKSRSVMLASMKARQM
LTWILGKEDSKFKHCENLQVL*
BS32979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgk3-PG | 449 | CG34397-PG | 72..449 | 44..421 | 1965 | 100 | Plus |
| Rgk3-PF | 449 | CG34397-PF | 72..449 | 44..421 | 1965 | 100 | Plus |
| Rgk3-PC | 449 | CG34397-PC | 72..449 | 44..421 | 1965 | 100 | Plus |
| Rgk3-PE | 486 | CG34397-PE | 72..486 | 44..421 | 1917 | 91.1 | Plus |
| Rgk2-PA | 740 | CG34390-PA | 343..740 | 27..421 | 447 | 32.1 | Plus |
