BS32993.complete Sequence
1145 bp assembled on 2014-01-22
GenBank Submission: KX802961
> BS32993.complete
GAAGTTATCAGTCGACATGAGAAATCAACGGACTATAACCGATTTGCCAT
TCGAAGTGCTCGATATCATATTTAGTAACTTACGAAATCTAAGGGACAAA
CTTCGACTGGCGCAGGTTGATGATTATCTGGGAAAAGCGTTTTCGTACCA
CAGCCGCAGTGATTACAAGAAGTTCTCACCAAAAATACATTTTCCCGTTC
GACTTTATCGAGTTCTGCTGGCGAATTGTGGCCCTTCCATTGTGGAATTT
ACCTGTGGATCGGACACCTGGAGCGATCTGTTGGCCAAATCGATTGCGAA
GTACTGTCCCAACCTGGAGTCGGTGAACATCAGTGCTACATTAAGAAATA
GTCACAGTCTTCAATTTTTTCTATTGAATTTGGCGAATTCTTTAATATCG
GTCGAACTGAAGCTCAACGATAGTTGCCAATCGCCGAGGATACTTAATGC
CGTCGCCGAGCTGAAACACTTGAAAAAATTCTTGTATGAAGGATACATTG
ACCGGGGAGTTAATCAGCTGTGCAAACTGGTTGATCTGGAGGAGCTGCAA
CTCATCTATCAAGGTAGAGGATATAGATGCAGAGCAGTTAATCTTCTTCA
AATTTGCGGAAATATGACAAATCTTCGGCGTTTGACTGTGAGCAATATAT
CGATATCTCAACCAGAAAGCTTCCATCCCATGATATGGCCAAACTTAAAA
GATTTGAAAATGCAAAATTGCGAAATCTCCACAGTGATGCCCGATTGTCC
CAAGCTGAAAACCTTATATATCAAATTCTGCAAATGTAGAATCAAAGGAT
ATGTATGCAGTTTTATTTTGAAAAACGGCAATAATATCGAGGAAATCGAT
GAAAGCTGTGAACCGGCACCATTTGATGGCCAGAGTTTCCTTCAAGTCAT
TCGAAGCTGTCCAAAATTGCAAGTGTTGTCCACTCAAATGGGGGGTATCA
AGATCTACCAAGCTTTTGTTACATCCGTAGTGGATATTCTCAAGGAGACT
GCATCAACGCGAAAAGAACCCTTCGAGCTGATATTGTACTGCCGAGACAA
GCTTAGATGGTTTCGACGATTTTTACAACGGACTTCTAATCCTGAAGTGA
TTCATACGCTTTACCTGTACAAGTTTTAAAAGCTTTCTAGACCAT
BS32993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44005-RB | 1113 | CG44005-PB | 1..1113 | 17..1129 | 5565 | 100 | Plus |
| CG44005-RA | 1113 | CG44005-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44005-RB | 1406 | CG44005-RB | 55..1167 | 17..1129 | 5565 | 100 | Plus |
| CG44005-RA | 1247 | CG44005-RA | 55..1167 | 17..1129 | 5565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18070660..18071224 | 1072..508 | 2825 | 100 | Minus |
| 3L | 28110227 | 3L | 18071573..18072069 | 513..17 | 2470 | 99.8 | Minus |
| 3L | 28110227 | 3L | 18070539..18070595 | 1129..1073 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:47:18 has no hits.
BS32993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:05:06 Download gff for
BS32993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44005-RA | 55..1165 | 17..1127 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:23:00 Download gff for
BS32993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44005-RA | 55..1165 | 17..1127 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:23:00 Download gff for
BS32993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18070541..18070595 | 1073..1127 | 100 | <- | Minus |
| 3L | 18070660..18071222 | 510..1072 | 100 | <- | Minus |
| 3L | 18071577..18072069 | 17..509 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:05:06 Download gff for
BS32993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18063641..18063695 | 1073..1127 | 100 | <- | Minus |
| arm_3L | 18063760..18064322 | 510..1072 | 100 | <- | Minus |
| arm_3L | 18064677..18065169 | 17..509 | 100 | | Minus |
BS32993.pep Sequence
Translation from 16 to 1128
> BS32993.pep
MRNQRTITDLPFEVLDIIFSNLRNLRDKLRLAQVDDYLGKAFSYHSRSDY
KKFSPKIHFPVRLYRVLLANCGPSIVEFTCGSDTWSDLLAKSIAKYCPNL
ESVNISATLRNSHSLQFFLLNLANSLISVELKLNDSCQSPRILNAVAELK
HLKKFLYEGYIDRGVNQLCKLVDLEELQLIYQGRGYRCRAVNLLQICGNM
TNLRRLTVSNISISQPESFHPMIWPNLKDLKMQNCEISTVMPDCPKLKTL
YIKFCKCRIKGYVCSFILKNGNNIEEIDESCEPAPFDGQSFLQVIRSCPK
LQVLSTQMGGIKIYQAFVTSVVDILKETASTRKEPFELILYCRDKLRWFR
RFLQRTSNPEVIHTLYLYKF*
BS32993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44005-PB | 370 | CG44005-PB | 1..370 | 1..370 | 1940 | 100 | Plus |
| CG44005-PA | 370 | CG44005-PA | 1..370 | 1..370 | 1940 | 100 | Plus |
| CG44006-PA | 374 | CG44006-PA | 1..372 | 1..370 | 860 | 47.2 | Plus |
| CG44004-PC | 368 | CG44004-PC | 1..365 | 1..367 | 655 | 39.2 | Plus |
| CG44004-PB | 368 | CG44004-PB | 1..365 | 1..367 | 655 | 39.2 | Plus |
