BS33024.complete Sequence
1199 bp assembled on 2014-01-22
GenBank Submission: KX806132
> BS33024.complete
GAAGTTATCAGTCGACATGCGATTGGTGGAGTGCTTTATTCCCGCTTTTT
GTGGGCTCTTTGCTGGCTCCTGGGCGGACCACTATGGACGCAAGCCTCTT
CTCATGTGCTCTTTTCTAGGCTACGGCCTTCAGTATCTCATTTCAGCTGC
GATTGCCTACTGTGCCATGTACACCCAAGGTCTGGTCAGTCCCTGGTGGT
ATGTGCTATCCATCGTACCGCTCTCTTGCTTGGGAAGCAGTGTGACCTAT
TCCGTGGCTGCCGTCTGTTTTATTGCCGATGTCTCCGGCGGAAAAGTTCG
ATCTTACAGGATGATTGCCTATGAACTGGCCATATATGTGGGCCTACTCC
TTGGTAGCCTTGGTTCTGGTTATGCATACGAGGCCACGGACGCCTACATT
GTGTTCAGCATATCTGCAGTTTGCATTTTCACGGCTCTATTTCTGATGGC
ACTCCTACTACCGGAGAGTTTGCCCGCCAGAAATAGGACACTATCAACAC
CGACGACTGACACCAGTGTGGTTTCCATGCTGAAGAGTTTGTGGAGCACC
TGCTCGAAGCCTCGTGAGCACCAGAATCGCTTCATGCTCACTACCATCAT
GGTAGTACTCCTCCTCACCGCCTTTGTATCGGACGGCAGCAACTCTGTGT
TCTATAAGTTTATGAGGATAAAGTTCCATTGGACCGTAAAGCAGTTTACT
GAGTACGAGACCGTTGGCATTCTTGTACCCGCAGTGGCTGGTTCAGGTGG
AGTTCTCTTTATTTGGTCGCTCCGCAAGTGCACCAATTCGGCGATTCTGT
GGCTGGCACTGGTTTCCCTGCTGAGCCACTGCTCCAGCAGCCTGATGAAG
GGCTTCGCCTTGGAGAGCTGGCAGATATACGTGGCTATTGGGCTGGGCGT
TTTCAAGTCGCTTGTGAACCCCATGTGCCGCACCATGATCACCAATTTGC
TGCCGGCTGATGAGCGGGGCAAAATCTTTGCCCTGCTTGGTGTCTTGCAA
GCACTTTCCCCCCTCATATCTTCCACCTTGTACGTTGCGATCTACACCCG
TACACTGAACACTGAACCGGGGATTTTCAACGTGTTTAGCGCCTTCTTAT
TTGGCATCGGTATTATTCTGCTGGGCACGGTTTGGCACAAAAAGTCAAGA
AATCTCGTGTACTATGAGCCGGTTTTTAAATGAAAGCTTTCTAGACCAT
BS33024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8046-RB | 1167 | CG8046-PB | 1..1167 | 17..1183 | 5790 | 99.7 | Plus |
CG8046-RA | 1560 | CG8046-PA | 394..1560 | 17..1183 | 5790 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8046-RB | 2325 | CG8046-RB | 469..1635 | 17..1183 | 5790 | 99.7 | Plus |
CG8046-RA | 1878 | CG8046-RA | 411..1577 | 17..1183 | 5790 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9163703..9164027 | 632..308 | 1625 | 100 | Minus |
2R | 25286936 | 2R | 9164082..9164274 | 310..118 | 965 | 100 | Minus |
2R | 25286936 | 2R | 9163073..9163262 | 966..777 | 950 | 100 | Minus |
2R | 25286936 | 2R | 9162847..9163004 | 1125..968 | 790 | 100 | Minus |
2R | 25286936 | 2R | 9163329..9163475 | 778..632 | 735 | 100 | Minus |
2R | 25286936 | 2R | 9164328..9164431 | 120..17 | 505 | 99 | Minus |
2R | 25286936 | 2R | 9162727..9162785 | 1183..1125 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:50:00 has no hits.
BS33024.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:06:17 Download gff for
BS33024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8046-RA | 411..1576 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:19 Download gff for
BS33024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8046-RA | 411..1576 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:19 Download gff for
BS33024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9162728..9162784 | 1126..1182 | 98 | <- | Minus |
2R | 9162847..9163003 | 969..1125 | 100 | <- | Minus |
2R | 9163071..9163260 | 779..968 | 99 | <- | Minus |
2R | 9163329..9163474 | 633..778 | 100 | <- | Minus |
2R | 9163703..9164025 | 310..632 | 100 | <- | Minus |
2R | 9164083..9164272 | 120..309 | 100 | <- | Minus |
2R | 9164329..9164431 | 17..119 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:06:17 Download gff for
BS33024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5051588..5051777 | 120..309 | 100 | <- | Minus |
arm_2R | 5051834..5051936 | 17..119 | 99 | | Minus |
arm_2R | 5050233..5050289 | 1126..1182 | 98 | <- | Minus |
arm_2R | 5050352..5050508 | 969..1125 | 100 | <- | Minus |
arm_2R | 5050576..5050765 | 779..968 | 99 | <- | Minus |
arm_2R | 5050834..5050979 | 633..778 | 100 | <- | Minus |
arm_2R | 5051208..5051530 | 310..632 | 100 | <- | Minus |
BS33024.pep Sequence
Translation from 16 to 1182
> BS33024.pep
MRLVECFIPAFCGLFAGSWADHYGRKPLLMCSFLGYGLQYLISAAIAYCA
MYTQGLVSPWWYVLSIVPLSCLGSSVTYSVAAVCFIADVSGGKVRSYRMI
AYELAIYVGLLLGSLGSGYAYEATDAYIVFSISAVCIFTALFLMALLLPE
SLPARNRTLSTPTTDTSVVSMLKSLWSTCSKPREHQNRFMLTTIMVVLLL
TAFVSDGSNSVFYKFMRIKFHWTVKQFTEYETVGILVPAVAGSGGVLFIW
SLRKCTNSAILWLALVSLLSHCSSSLMKGFALESWQIYVAIGLGVFKSLV
NPMCRTMITNLLPADERGKIFALLGVLQALSPLISSTLYVAIYTRTLNTE
PGIFNVFSAFLFGIGIILLGTVWHKKSRNLVYYEPVFK*
BS33024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8046-PB | 388 | CG8046-PB | 1..388 | 1..388 | 2003 | 100 | Plus |
CG8046-PA | 519 | CG8046-PA | 132..519 | 1..388 | 2003 | 100 | Plus |
CG15553-PC | 521 | CG15553-PC | 93..521 | 3..388 | 697 | 35.5 | Plus |
CG30344-PA | 507 | CG30344-PA | 125..490 | 3..373 | 584 | 32.9 | Plus |
CG30345-PB | 496 | CG30345-PB | 114..468 | 3..362 | 530 | 30.3 | Plus |