BS33038.complete Sequence
2423 bp assembled on 2014-03-03
GenBank Submission: KX801144
> BS33038.complete
GAAGTTATCAGTCGACATGCGGCTCAGCAGCGGATACGACACCGAGTTCG
TGCCACTGGAGCACCAGCAGCAGCCGCAGGGACGCCAGGAGACGGCGGCC
ACCGTTCCCGCTCAAACCCCCAGCGGTGTGGAGCAGAAGCCGTTCAATGT
GGACACCATCACCACGGATGTGAATTCCCCAAATCCGGCCATCTTCTTCC
AGCAATCGTTCCCCTTCTTTGGCAATGAGTTCTTCAATTCGTTCGGAGGC
TTTGGCTTTGGAGCTGCCCAGGAGCCCTGGTGGAAGGGACCCAATGTGTG
CACCGAAAAGGAGGAAGACGAGACTGTGGCCAGTGAAACGGAGGCAGAAG
AAACCGTGGACACCTTTGGCCAGGAACGTGATGGCGTTACCAACGTGGTG
CGATCCCCACTCTTTGGCCAGTTCCAGTTCAGCGTTAACTCCTGCGCCGA
GAAGCCCAACAAGCACGTCTGCACCAAGATCGTGAATCAAAATGGCAAGA
AGAAAACGCTGACGCTGACCCGCCAGTGCTGCTATGGATATGGACGCCCC
AGAAACGCTGACTTCACAACGCCCTGCGAGAAGATCGACATCAAGGACGT
GGAGGCCACGGCCAGTGACATGGGTGCCAAGCAGTTCCTGGAGAGTGCAC
GCACCGCCGGTGAGCTGGCCGATATGCTCGGAGCAGGCAGTGGCAAGAAG
GTGACCCTCTTCGTGCCCAACGACGCCGCCTTCATGGAGTACCGTGGTCA
TCATCAGCAGGAGAATAATGTGGAAGATGCCAAGGCCGAGGCTTCCAAGC
CATCCATCTACAAACTGCACGCTGTTCTCGGCGAAGTTCAGCTGGAGGAT
GTGCCCAATGAGAAGCTTCTGCAGACGGAGCTGCCTGACCAGAAGATCCG
CATCAACAGCTACCAGCTGCCTGCGGCTTTGGGCCTGGAACCCTACCGCT
TTGCCGCCAACTGTGTGCCCATCGAGAAGCACGACAAGCTCTCGGAGCAG
GCCCTTGTCCACACTCTGGGCGGAGTCCTGAAGCCGCTGACCAAGAACCT
TATGGATATCATCAGGGAGCGTGCGGATATGTCCATTATGCGCACCGTTC
TGGAGAAGACCAACCTGAGCGCCATGCTAGAGGATGACAAGCCAGTGACC
ATCTTTGTGCCCACCGATGCCGCCTTCGACAAGTTGGAACCTCATCTGCG
TCGAGCCCTCAAGGAAGGTCGCGGTTGTGCCTCCAACATCCTGAAGAACC
ATTTGCTGGACCTCACCTTCTGCTCGCTGGCCACTGTTCCGGGTGCCAAG
ACGACGGCCTACAATCTACTGGGAGAACCCCTGCTCCTCAACCGAACCCA
CCGCGCTGCGAATCAGACTGGACCGACTCCCATCTACATCAATAACTTGG
CCAAAATCATTGATGCCGATATCATGGGCACCAATGGTGTGCTGCACGTA
ATCGACACCATCCTGCCCACCGAATCGGCTCTGCCCATGACCTCGCTGAT
GTCGCAAAAGAACCTGACCATCTTCCAGCGATTGCTGGAGGCCTCCGGCT
ACGATGATCAGTTCGACGATCTGGACAACGTGACCATCTTTGCACCAACT
GACAAGGCTCTGCAGAATACGGAATGGGCTCGCATGCTCAAGGAACAGCC
GGAGCTGCTGAATCATAACTTGGATCTGCTGGAGTTCCTTAACTACCATG
TGGTCAAGCCCATGATCAAGACCTGTGACCTGTCGGAGAAGTCCCTGCCC
ACGGTTGCTGGATCTAGTGTGCGTCTGAACCTGTACTCCACCCATGCTCT
CTTCTCGGACGTGATGAACCGGGCAACGGTAAACTGTGCCCGTTTGGTGC
ACTTCGATGACGAGAGCTGCGGATCCGTTCTCCACCAGGTGGATCGTGCC
TTGGCGCCTCCCAAGAATAACATGCTTAAGCTGCTGGAGGCTAATCCCAA
CTACAGCAAGTTCCTGGAGCTGGTTCGTAAGGCTAATCTTACACAGCTGC
TGTCCAACGATTCGAGGAGTCTCACCCTGCTGGTGCCAAAGAACGATATC
TTCGAGGAGCTGAACGAGTCCGGTGAGGGTTCAAAGCCCGCCGATCCCAT
GGCCTTGGTCAAAACCCATATCGTTGAGGATGTTGTCTGCTGTGCCGGCA
TTATCCCAACCAACTGGCCATTTGTCCGCTCCATCGAGTCCATCTCTGGC
CAGCATCTGCGTATCACCCGCGATCGTCGTCCCAAGATCGAGAACGCCGG
CGTCACCAAGTGCGATGTGGTGGCCACCAATGGAATTCTCCATGAGATCA
ACGACATCATCGTGCCACGCCCACAGCGCCAGCAACAGCAGCGACCCCAG
CTGATCCCGCCCGGAGCTGGCTATCAGCCACAGGGCGATTTCGATGTCTT
CTTCTGAAAGCTTTCTAGACCAT
BS33038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-RQ | 2391 | CG3359-PQ | 1..2391 | 17..2407 | 11955 | 100 | Plus |
| mfas-RK | 2646 | CG3359-PK | 263..2646 | 24..2407 | 11920 | 100 | Plus |
| mfas-RJ | 2718 | CG3359-PJ | 335..2718 | 24..2407 | 11920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-RQ | 2677 | CG3359-RQ | 150..2540 | 17..2407 | 11955 | 100 | Plus |
| mfas-RK | 2912 | CG3359-RK | 392..2775 | 24..2407 | 11920 | 100 | Plus |
| mfas-RJ | 2962 | CG3359-RJ | 442..2825 | 24..2407 | 11920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11985549..11986231 | 1918..1236 | 3415 | 100 | Minus |
| 3R | 32079331 | 3R | 11984999..11985487 | 2407..1919 | 2445 | 100 | Minus |
| 3R | 32079331 | 3R | 11986304..11986772 | 1235..767 | 2345 | 100 | Minus |
| 3R | 32079331 | 3R | 11986835..11987120 | 766..481 | 1430 | 100 | Minus |
| 3R | 32079331 | 3R | 11987185..11987377 | 480..288 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 11988658..11988799 | 288..147 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 11989210..11989332 | 146..24 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:06:50 has no hits.
BS33038.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:37 Download gff for
BS33038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RQ | 150..2539 | 17..2406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:36 Download gff for
BS33038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RQ | 150..2539 | 17..2406 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:36 Download gff for
BS33038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11985000..11985487 | 1919..2406 | 100 | <- | Minus |
| 3R | 11985549..11986231 | 1236..1918 | 100 | <- | Minus |
| 3R | 11986304..11986772 | 767..1235 | 100 | <- | Minus |
| 3R | 11986835..11987120 | 481..766 | 100 | <- | Minus |
| 3R | 11987185..11987376 | 289..480 | 100 | <- | Minus |
| 3R | 11988658..11988799 | 147..288 | 100 | <- | Minus |
| 3R | 11989210..11989332 | 24..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:37 Download gff for
BS33038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7814932..7815054 | 24..146 | 100 | | Minus |
| arm_3R | 7810722..7811209 | 1919..2406 | 100 | <- | Minus |
| arm_3R | 7811271..7811953 | 1236..1918 | 100 | <- | Minus |
| arm_3R | 7812026..7812494 | 767..1235 | 100 | <- | Minus |
| arm_3R | 7812557..7812842 | 481..766 | 100 | <- | Minus |
| arm_3R | 7812907..7813098 | 289..480 | 100 | <- | Minus |
| arm_3R | 7814380..7814521 | 147..288 | 100 | <- | Minus |
BS33038.pep Sequence
Translation from 16 to 2406
> BS33038.pep
MRLSSGYDTEFVPLEHQQQPQGRQETAATVPAQTPSGVEQKPFNVDTITT
DVNSPNPAIFFQQSFPFFGNEFFNSFGGFGFGAAQEPWWKGPNVCTEKEE
DETVASETEAEETVDTFGQERDGVTNVVRSPLFGQFQFSVNSCAEKPNKH
VCTKIVNQNGKKKTLTLTRQCCYGYGRPRNADFTTPCEKIDIKDVEATAS
DMGAKQFLESARTAGELADMLGAGSGKKVTLFVPNDAAFMEYRGHHQQEN
NVEDAKAEASKPSIYKLHAVLGEVQLEDVPNEKLLQTELPDQKIRINSYQ
LPAALGLEPYRFAANCVPIEKHDKLSEQALVHTLGGVLKPLTKNLMDIIR
ERADMSIMRTVLEKTNLSAMLEDDKPVTIFVPTDAAFDKLEPHLRRALKE
GRGCASNILKNHLLDLTFCSLATVPGAKTTAYNLLGEPLLLNRTHRAANQ
TGPTPIYINNLAKIIDADIMGTNGVLHVIDTILPTESALPMTSLMSQKNL
TIFQRLLEASGYDDQFDDLDNVTIFAPTDKALQNTEWARMLKEQPELLNH
NLDLLEFLNYHVVKPMIKTCDLSEKSLPTVAGSSVRLNLYSTHALFSDVM
NRATVNCARLVHFDDESCGSVLHQVDRALAPPKNNMLKLLEANPNYSKFL
ELVRKANLTQLLSNDSRSLTLLVPKNDIFEELNESGEGSKPADPMALVKT
HIVEDVVCCAGIIPTNWPFVRSIESISGQHLRITRDRRPKIENAGVTKCD
VVATNGILHEINDIIVPRPQRQQQQRPQLIPPGAGYQPQGDFDVFF*
BS33038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-PQ | 796 | CG3359-PQ | 1..796 | 1..796 | 4153 | 100 | Plus |
| mfas-PO | 839 | CG3359-PO | 47..839 | 4..796 | 4139 | 100 | Plus |
| mfas-PM | 840 | CG3359-PM | 48..840 | 4..796 | 4139 | 100 | Plus |
| mfas-PK | 881 | CG3359-PK | 89..881 | 4..796 | 4139 | 100 | Plus |
| mfas-PJ | 905 | CG3359-PJ | 113..905 | 4..796 | 4139 | 100 | Plus |
