BS33044.complete Sequence
1517 bp assembled on 2014-07-17
GenBank Submission: KX803656
> BS33044.complete
GAAGTTATCAGTCGACATGTCGGTACACTATAAATTTAAGAGTACACTCA
ACTTTGATACAATTACTTTTGATGGACTTCACATTTCTGTCGGGGACTTA
AAAAGGGAGATTGTGCAGCAGAAGCGACTGGGCAAAATCATCGACTTTGA
TCTCCAAATAACAAATGCGCAGAGTAAAGAAGAATACAAGGACGATGGGT
TCCTTATTCCCAAAAACACAACGCTGATCATATCGCGCATCCCCATCGCC
CATCCCACAAAAAAGGGCTGGGAGCCACCAGCAGCAGAAAATGCCTTTTC
GGCGGCGCCTGCCAAGCAGGACAACTTCAACATGGACCTGTCCAAAATGC
AAGGCACGGAGGAGGACAAAATCCAGGCCATGATGATGCAGAGCACAGTC
GACTATGATCCTAAGACGTACCATCGTATTAAAGGACAATCGCAAGTGGG
AGAAGTTCCCGCATCCTACCGATGCAACAAATGCAAGAAAAGCGGACACT
GGATCAAAAACTGTCCCTTTGTGGGGGGAAAGGACCAGCAAGAGGTCAAA
CGGAATACTGGTATTCCGCGGTCTTTCCGCGACAAGCCAGATGCGGCTGA
GAACGAATCAGCCGATTTTGTGCTGCCTGCTGTACAAAACCAAGAGATAC
CGGAGGATCTGATATGCGGCATATGCCGAGATATATTCGTCGATGCTGTC
ATGATACCCTGCTGCGGAAGTTCCTTTTGTGACGACTGTGTGCGAACCTC
CTTATTGGAGTCAGAGGATAGTGAGTGCCCCGATTGCAAGGAGAAGAACT
GTTCGCCTGGCTCCCTGATACCTAATCGGTTCTTGAGGAATTCGGTGAAC
GCCTTTAAAAATGAGACTGGGTATAACAAAAGCGCGGCTAAGCCAGCTGC
AGTAAAAAATGAGGAAAAACCTCCTGTTGAAAAAGAAGTGGAGAAAAAGC
CAGTCGCGGAGGTGGAACCCGAAGAGACTGAGGTGAAACCTGAAAAGCAA
AAAGAATCCGAAACCAATGGCAGTAATCCGCCAAAATCGGAATCTCCAGA
GCCTCCCGCAACCACAGAACCATCACAGAAGGAGAAAGATAAATATGATT
CAGACTACGAGGATAACATTACCATAAAAATGCCCCAGCCTGCAGCTGAT
TCTACAACAGTGCCCAGCAAAAGATCCCCCAGTTATTCCCACAGAAGTGA
ATCCTCTCATCGACGGGACAGGTCGGATTATGTTTCCGATCACGATCACA
AGCACCAACGTCCATCAAAATCGGAGTCTGTTAACAAGGATCGCAGTCTC
CTGCCCTTGCCCATTGGCACCCTGCCTAGCTACCAGGGCCACATGATGGC
CGAATCAGAAGAAGCTCGTCGATCGAGTGCCTATAAGCCCCCTTATATGC
AAATGCAGCGGGGCCCACCTCCTATGCACATGATGAGTCACCACATGCCA
GCCTACAACAACGGGTTTAACAACATGGGACAGAGGCCTCCCCTCAGGTA
GAAGCTTTCTAGACCAT
BS33044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snama-RB | 1485 | CG3231-PB | 1..1485 | 17..1501 | 7425 | 100 | Plus |
| snama-RA | 3696 | CG3231-PA | 1..1481 | 17..1497 | 7405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snama-RB | 1972 | CG3231-RB | 247..1731 | 17..1501 | 7425 | 100 | Plus |
| snama-RA | 3936 | CG3231-RA | 119..1599 | 17..1497 | 7405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24088065..24088543 | 418..896 | 2395 | 100 | Plus |
| 2R | 25286936 | 2R | 24088942..24089271 | 1172..1501 | 1650 | 100 | Plus |
| 2R | 25286936 | 2R | 24088602..24088878 | 895..1171 | 1385 | 100 | Plus |
| 2R | 25286936 | 2R | 24087774..24088013 | 181..420 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 24087551..24087716 | 17..182 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:11:49 has no hits.
BS33044.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:53:56 Download gff for
BS33044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RB | 247..1731 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:24 Download gff for
BS33044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RB | 247..1731 | 17..1501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:24 Download gff for
BS33044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24087551..24087716 | 17..182 | 100 | -> | Plus |
| 2R | 24087776..24088010 | 183..417 | 100 | -> | Plus |
| 2R | 24088065..24088543 | 418..896 | 100 | -> | Plus |
| 2R | 24088604..24088878 | 897..1171 | 100 | -> | Plus |
| 2R | 24088942..24089271 | 1172..1501 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:53:56 Download gff for
BS33044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19975074..19975239 | 17..182 | 100 | -> | Plus |
| arm_2R | 19975299..19975533 | 183..417 | 100 | -> | Plus |
| arm_2R | 19975588..19976066 | 418..896 | 100 | -> | Plus |
| arm_2R | 19976127..19976401 | 897..1171 | 100 | -> | Plus |
| arm_2R | 19976465..19976794 | 1172..1501 | 100 | | Plus |
BS33044.pep Sequence
Translation from 16 to 1500
> BS33044.pep
MSVHYKFKSTLNFDTITFDGLHISVGDLKREIVQQKRLGKIIDFDLQITN
AQSKEEYKDDGFLIPKNTTLIISRIPIAHPTKKGWEPPAAENAFSAAPAK
QDNFNMDLSKMQGTEEDKIQAMMMQSTVDYDPKTYHRIKGQSQVGEVPAS
YRCNKCKKSGHWIKNCPFVGGKDQQEVKRNTGIPRSFRDKPDAAENESAD
FVLPAVQNQEIPEDLICGICRDIFVDAVMIPCCGSSFCDDCVRTSLLESE
DSECPDCKEKNCSPGSLIPNRFLRNSVNAFKNETGYNKSAAKPAAVKNEE
KPPVEKEVEKKPVAEVEPEETEVKPEKQKESETNGSNPPKSESPEPPATT
EPSQKEKDKYDSDYEDNITIKMPQPAADSTTVPSKRSPSYSHRSESSHRR
DRSDYVSDHDHKHQRPSKSESVNKDRSLLPLPIGTLPSYQGHMMAESEEA
RRSSAYKPPYMQMQRGPPPMHMMSHHMPAYNNGFNNMGQRPPLR*
BS33044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snama-PB | 494 | CG3231-PB | 1..494 | 1..494 | 2645 | 100 | Plus |
| snama-PA | 1231 | CG3231-PA | 1..493 | 1..493 | 2640 | 100 | Plus |
