BS33058.complete Sequence
1049 bp assembled on 2014-01-22
GenBank Submission: KX800719
> BS33058.complete
GAAGTTATCAGTCGACATGCCAGTTCTGGAAGTGAGCATTTACACCCTGC
TGAAGATGGCGTTCATTTGGCAGCTGATCTCGGCGGCCATCTACCTCGTA
GGACTGCTCACCATCGGTGTGTTTCTGTACGACAACCTGAAGTCATTGGT
CAGCATAATCAAGGCCGTCCTGGAACCCTACTTCCAGCCCCACTTGCCAA
GGACATTGGTGGATAAGTTCGGACAGTGGGCAGTGGTGACTGGAGCCACC
GATGGCATTGGCAAGGAGTACGCCAGGGAGCTGGCTCGCCAGGGTATCAA
CCTGGTGCTCATCTCGCGGACGAAGGAGAAGCTCATTGCGGTTACCAATG
AGATTGAGAGCCAGTACAAAGTGAAGACCAAGTGGATTGCAGCGGATTTC
GCCAAGGGACGTGAGGTGTACGATCAGATCGAAAAGGAACTGGCGGGCAT
AGACGTTGGCATTTTGGTCAACAACGTGGGCATGATGTATGAGCACCCCG
AGAGTCTGGACCTGGTCTCAGAGGATCTTCTTTGGAACCTTCTTACCGTC
AACATGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCCCAGATGAT
TGGTCGCCGAAAGGGCGCCATTGTCAATCTGGGATCCTCCTCTGAGCTCC
AGCCACTGCCCAACATGACCGTCTATGCTGCGAGCAAGAAGTTTGTCACC
TACTTCTCCAAGGCCCTGGAACTGGAGGTGGCGGAGCACAATATCCACGT
GCAGCTGGTGATGCCCAACTTTGTGGTGACCAAAATGAATGCCTACACCG
ATCGGGTAATGCAGGGAGGTCTGTTTTTCCCGAACGCATACACTTTTGCC
CGGTCCGCCGTATTTACACTGGGAAAAACGAGCGAGACCAACGGTTTCTG
GACCCATGGCATTCAGTATGCCATTATGAAATTGGCTCCCCTGCCGATCC
GCACATACTTGGGACACCAACTGTTCAAACGACTGAGAATCGAGGCCCTC
GAGCAAAAGCAAAAGAAACTGAAGCTTACTTAGAAGCTTTCTAGACCAT
BS33058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13284-RC | 1017 | CG13284-PC | 1..1017 | 17..1033 | 5085 | 100 | Plus |
| CG13284-RD | 1020 | CG13284-PD | 6..1020 | 19..1033 | 5075 | 100 | Plus |
| CG13284-RB | 1020 | CG13284-PB | 6..1020 | 19..1033 | 5075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13284-RC | 1676 | CG13284-RC | 586..1607 | 12..1033 | 5095 | 99.9 | Plus |
| CG13284-RD | 2178 | CG13284-RD | 233..1247 | 19..1033 | 5075 | 100 | Plus |
| CG13284-RB | 1316 | CG13284-RB | 233..1247 | 19..1033 | 5075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16843513..16843962 | 916..467 | 2250 | 100 | Minus |
| 2L | 23513712 | 2L | 16846751..16846965 | 233..19 | 1075 | 100 | Minus |
| 2L | 23513712 | 2L | 16849410..16849778 | 901..533 | 810 | 81.3 | Minus |
| 2L | 23513712 | 2L | 16853968..16854336 | 901..533 | 810 | 81.3 | Minus |
| 2L | 23513712 | 2L | 16844679..16844803 | 356..232 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 16843278..16843397 | 1033..914 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 16844509..16844620 | 467..356 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 16854716..16854840 | 356..232 | 295 | 82.4 | Minus |
| 2L | 23513712 | 2L | 16850158..16850282 | 356..232 | 295 | 82.4 | Minus |
| 2L | 23513712 | 2L | 16849984..16850093 | 467..358 | 250 | 81.8 | Minus |
| 2L | 23513712 | 2L | 16854542..16854651 | 467..358 | 250 | 81.8 | Minus |
| 2L | 23513712 | 2L | 16849173..16849264 | 1005..914 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:50:21 has no hits.
BS33058.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:06:25 Download gff for
BS33058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13284-RC | 591..1607 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:26 Download gff for
BS33058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13284-RC | 591..1607 | 17..1033 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:26 Download gff for
BS33058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16843278..16843394 | 917..1033 | 100 | <- | Minus |
| 2L | 16843513..16843961 | 468..916 | 100 | <- | Minus |
| 2L | 16844509..16844619 | 357..467 | 100 | <- | Minus |
| 2L | 16844679..16844801 | 234..356 | 100 | <- | Minus |
| 2L | 16846751..16846966 | 17..233 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:06:25 Download gff for
BS33058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16843278..16843394 | 917..1033 | 100 | <- | Minus |
| arm_2L | 16843513..16843961 | 468..916 | 100 | <- | Minus |
| arm_2L | 16844509..16844619 | 357..467 | 100 | <- | Minus |
| arm_2L | 16844679..16844801 | 234..356 | 100 | <- | Minus |
| arm_2L | 16846751..16846966 | 17..233 | 99 | | Minus |
BS33058.pep Sequence
Translation from 16 to 1032
> BS33058.pep
MPVLEVSIYTLLKMAFIWQLISAAIYLVGLLTIGVFLYDNLKSLVSIIKA
VLEPYFQPHLPRTLVDKFGQWAVVTGATDGIGKEYARELARQGINLVLIS
RTKEKLIAVTNEIESQYKVKTKWIAADFAKGREVYDQIEKELAGIDVGIL
VNNVGMMYEHPESLDLVSEDLLWNLLTVNMGSVTMLTRKILPQMIGRRKG
AIVNLGSSSELQPLPNMTVYAASKKFVTYFSKALELEVAEHNIHVQLVMP
NFVVTKMNAYTDRVMQGGLFFPNAYTFARSAVFTLGKTSETNGFWTHGIQ
YAIMKLAPLPIRTYLGHQLFKRLRIEALEQKQKKLKLT*
BS33058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13284-PC | 338 | CG13284-PC | 1..338 | 1..338 | 1711 | 100 | Plus |
| CG13284-PD | 339 | CG13284-PD | 3..339 | 2..338 | 1706 | 100 | Plus |
| CG13284-PB | 339 | CG13284-PB | 3..339 | 2..338 | 1706 | 100 | Plus |
| CG13284-PE | 325 | CG13284-PE | 1..325 | 14..338 | 1649 | 100 | Plus |
| CG13284-PA | 325 | CG13284-PA | 1..325 | 14..338 | 1649 | 100 | Plus |
