BS33071.complete Sequence
1175 bp assembled on 2014-01-27
GenBank Submission: KX806401
> BS33071.complete
GAAGTTATCAGTCGACATGCCTGCAATAAAGTTACAAGAATCGAATTCAA
TTTATTCACGGAGCGAATGTTCGCCCACAATTGGAGTTCCAGCACTCGTG
GAGAGTCAAGGGGGCGAGGGGCACGAGTCGCGGCGCCCTGCAACAAATTA
TTTAAAAAGTTATTGCCGCATTAAGCGTCATGGTGTTAATAACAGTAAAA
CTTTATGTTGGCTGACACTGACTTTGATTTTATTGGCCAACCGATTTGGA
ATGGGCACAGCAGTCGGAACGCCGGAAACACCAGCTGCCGTAGGATCCAA
TGGGCTGCTGGCGGAAATGCCAATCGGAACCTGCAAACAGGCCTTGGGCA
TGGAGTCTGGCGCCATCGCCGACTTTCAAATAACGGCCAGTTCGGCCCAT
GATATGGGAAATGTGGGACCACAGCATGCCAGACTTAAGATAGACAACAA
CGGAGGCGCTTGGTGTCCCAAGCACATGGTATCTCGTGGTCTGACGGAGT
ACCTGCAAGTCGACCTGCTAGGTGTCCACCTGGTCAGTGCCATACGAACC
CAGGGTCGCTTTGGCAAGGGGCAGGGCCAGGAGTATACCGAAGCCTATGT
GATTGAGTACTGGAGGCCGGGCCTCAAGAAATGGATTCGATGGAGGAGCC
TCCAAGGCAAAGAGGTGCTGCCCGGCAACATAAACACCTACAGCGAGGTG
GAGAACGTGCTCCAGCCCAGCGTCTTTGCGTCCAAGGTGCGACTCTATCC
CTACAGCCAGTACGATCGCACCGTCTGCCTGCGCGCCGAGATCGTCGGCT
GTGCCTGGGAAGAGGGAATTGTATCGTACAGTATTCCCAAGGGCATGCAG
AGGGGCATGGACATCGATCTGTCGGACAAAACCTACGATGGATACGAGGA
GGGTGATCATTATGTCAACGGTTTGGGCCAACTTGTTGATGGTCAGCGGG
GCAAGGACAACTTTCGAGCCGATATTAATGGCCTTGGCAAAGGTTACGAA
TGGATTGGCTGGCGAAACGACACTTTGCTCGGGCGTCCAGTTGAAATCAT
ATTCGAGTTTGAGACAGTTCGGAATTTAAGTGCTGTTATCATACACACCA
ACAACATGTTTTCCAAAGATGTTCAGGTAAATAAAAAGTTAAACACAAAA
ACCAACTAAAAGCTTTCTAGACCAT
BS33071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddr-RD | 1143 | CG33531-PD | 1..1143 | 17..1159 | 5715 | 100 | Plus |
| Ddr-RG | 3165 | CG33531-PG | 1..1112 | 17..1128 | 5560 | 100 | Plus |
| Ddr-RF | 3165 | CG33531-PF | 1..1112 | 17..1128 | 5560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddr-RD | 1690 | CG33531-RD | 275..1419 | 17..1161 | 5725 | 100 | Plus |
| Ddr-RG | 4360 | CG33531-RG | 275..1386 | 17..1128 | 5560 | 100 | Plus |
| Ddr-RF | 4770 | CG33531-RF | 275..1386 | 17..1128 | 5560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6272817..6273127 | 17..327 | 1555 | 100 | Plus |
| 2L | 23513712 | 2L | 6289762..6289999 | 430..667 | 1190 | 100 | Plus |
| 2L | 23513712 | 2L | 6291004..6291187 | 811..994 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 6291243..6291413 | 991..1161 | 855 | 100 | Plus |
| 2L | 23513712 | 2L | 6290542..6290691 | 663..812 | 750 | 100 | Plus |
| 2L | 23513712 | 2L | 6278678..6278784 | 326..432 | 535 | 100 | Plus |
| 2L | 23513712 | 2L | 6196852..6196996 | 668..812 | 335 | 82.1 | Plus |
| 2L | 23513712 | 2L | 6196561..6196777 | 450..666 | 320 | 76.5 | Plus |
| 2L | 23513712 | 2L | 6201260..6201412 | 811..963 | 285 | 79.1 | Plus |
Blast to na_te.dros performed 2014-11-28 14:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 5827..5900 | 1168..1091 | 119 | 65.4 | Minus |
BS33071.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-27 13:23:29 Download gff for
BS33071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddr-RD | 275..1415 | 17..1157 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:44 Download gff for
BS33071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddr-RD | 275..1415 | 17..1157 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:44 Download gff for
BS33071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6272817..6273126 | 17..326 | 100 | -> | Plus |
| 2L | 6278679..6278784 | 327..432 | 100 | -> | Plus |
| 2L | 6289765..6289996 | 433..664 | 100 | -> | Plus |
| 2L | 6290544..6290691 | 665..812 | 100 | -> | Plus |
| 2L | 6291006..6291185 | 813..992 | 100 | -> | Plus |
| 2L | 6291245..6291409 | 993..1157 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-27 13:23:29 Download gff for
BS33071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6272817..6273126 | 17..326 | 100 | -> | Plus |
| arm_2L | 6278679..6278784 | 327..432 | 100 | -> | Plus |
| arm_2L | 6289765..6289996 | 433..664 | 100 | -> | Plus |
| arm_2L | 6290544..6290691 | 665..812 | 100 | -> | Plus |
| arm_2L | 6291006..6291185 | 813..992 | 100 | -> | Plus |
| arm_2L | 6291245..6291409 | 993..1157 | 100 | | Plus |
BS33071.pep Sequence
Translation from 16 to 1158
> BS33071.pep
MPAIKLQESNSIYSRSECSPTIGVPALVESQGGEGHESRRPATNYLKSYC
RIKRHGVNNSKTLCWLTLTLILLANRFGMGTAVGTPETPAAVGSNGLLAE
MPIGTCKQALGMESGAIADFQITASSAHDMGNVGPQHARLKIDNNGGAWC
PKHMVSRGLTEYLQVDLLGVHLVSAIRTQGRFGKGQGQEYTEAYVIEYWR
PGLKKWIRWRSLQGKEVLPGNINTYSEVENVLQPSVFASKVRLYPYSQYD
RTVCLRAEIVGCAWEEGIVSYSIPKGMQRGMDIDLSDKTYDGYEEGDHYV
NGLGQLVDGQRGKDNFRADINGLGKGYEWIGWRNDTLLGRPVEIIFEFET
VRNLSAVIIHTNNMFSKDVQVNKKLNTKTN*
BS33071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddr-PD | 380 | CG33531-PD | 1..380 | 1..380 | 2020 | 100 | Plus |
| Ddr-PG | 1054 | CG33531-PG | 1..371 | 1..371 | 1973 | 100 | Plus |
| Ddr-PF | 1054 | CG33531-PF | 1..371 | 1..371 | 1973 | 100 | Plus |
| CG34380-PE | 772 | CG34380-PE | 75..345 | 103..371 | 1195 | 79 | Plus |
| CG34380-PC | 772 | CG34380-PC | 75..345 | 103..371 | 1195 | 79 | Plus |
