BS33072.complete Sequence
704 bp assembled on 2014-01-22
GenBank Submission: KX805935
> BS33072.complete
GAAGTTATCAGTCGACATGATTGAGCGGCGCAGTCAGCTGGATAAGATAA
TCATCACCGCCATGGACCGCTTCGTCTGGTTCGTCCTACTCGTGGTCATG
TCCCACCTGGTCACCGAGTTCACCCGCGTCTCTGGATATGCGCGTGGCCA
GCGCCACGAGCTGGTGCTGCTGAATGATACGCTGCTGCAGCCCATGCCCG
TGCAGAACATGGTGCTGTACCCCAGCCAGGAGTACGGCCAGTACCAGCAG
CGACCCTCCTCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCTCCTC
CATGGGAGCCATGAGCAGCCTGCAGCAGAACGCGGCATTTTTGCTCAGCA
GCTTGGCGGCGGGAGTGAGTCCGACAAATGGAGCAGCTGCACCCGGCAGC
AACGCGGCCATTTTGTCCCTCGGCGATAGCCAACCGGCTCACACGGCCGA
GAGCACGTATCCCATGTTCAGCTTGCGTCCGCTGATCGACAGCATTTTCG
AGATTCCAATTTCGACGCTGCGTGCTGTTAACAACCTGGTGGGTCGCCTG
ACCGGCGGGTATCGCCAGGCGCCGGCGGAAGTGTCGCAAAAATCCGTGGC
AGCTGGAACGGCGCTGCCGCCCGGCAGGCAAAACCCCACGCTGAGTGCCC
ATCCCAGTGGGCAACGGATGCGCGAGGAGATGGCGTAAAAGCTTTCTAGA
CCAT
BS33072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9815-RC | 672 | CG9815-PC | 1..672 | 17..688 | 3360 | 100 | Plus |
CG9815-RB | 699 | CG9815-PB | 56..699 | 45..688 | 3220 | 100 | Plus |
CG9815-RA | 660 | CG9815-PA | 19..660 | 47..688 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9815-RC | 1108 | CG9815-RC | 249..920 | 17..688 | 3360 | 100 | Plus |
CG9815-RD | 928 | CG9815-RD | 94..740 | 42..688 | 3235 | 100 | Plus |
CG9815-RB | 979 | CG9815-RB | 148..791 | 45..688 | 3220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23421948..23422271 | 502..179 | 1620 | 100 | Minus |
2R | 25286936 | 2R | 23421709..23421896 | 688..501 | 940 | 100 | Minus |
2R | 25286936 | 2R | 23422435..23422568 | 178..45 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:50:29 has no hits.
BS33072.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:06:27 Download gff for
BS33072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9815-RC | 249..918 | 17..686 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:28 Download gff for
BS33072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9815-RC | 249..918 | 17..686 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:28 Download gff for
BS33072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23421711..23421894 | 503..686 | 100 | <- | Minus |
2R | 23421948..23422271 | 179..502 | 100 | <- | Minus |
2R | 23422435..23422566 | 47..178 | 100 | <- | Minus |
2R | 23431763..23431792 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:06:27 Download gff for
BS33072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19309471..19309794 | 179..502 | 100 | <- | Minus |
arm_2R | 19309958..19310089 | 47..178 | 100 | <- | Minus |
arm_2R | 19319286..19319315 | 17..46 | 100 | | Minus |
arm_2R | 19309234..19309417 | 503..686 | 100 | <- | Minus |
BS33072.pep Sequence
Translation from 16 to 687
> BS33072.pep
MIERRSQLDKIIITAMDRFVWFVLLVVMSHLVTEFTRVSGYARGQRHELV
LLNDTLLQPMPVQNMVLYPSQEYGQYQQRPSSSASASASASASSSMGAMS
SLQQNAAFLLSSLAAGVSPTNGAAAPGSNAAILSLGDSQPAHTAESTYPM
FSLRPLIDSIFEIPISTLRAVNNLVGRLTGGYRQAPAEVSQKSVAAGTAL
PPGRQNPTLSAHPSGQRMREEMA*
BS33072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9815-PC | 223 | CG9815-PC | 1..223 | 1..223 | 1105 | 100 | Plus |
CG9815-PB | 232 | CG9815-PB | 18..232 | 9..223 | 1059 | 99.1 | Plus |
CG9815-PA | 219 | CG9815-PA | 7..219 | 11..223 | 1057 | 100 | Plus |
CG9815-PD | 208 | CG9815-PD | 1..208 | 16..223 | 1036 | 100 | Plus |