Clone BS33072 Report

Search the DGRC for BS33072

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:330
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG9815-RC
Protein status:BS33072.pep: full length peptide match
Sequenced Size:704

Clone Sequence Records

BS33072.complete Sequence

704 bp assembled on 2014-01-22

GenBank Submission: KX805935

> BS33072.complete
GAAGTTATCAGTCGACATGATTGAGCGGCGCAGTCAGCTGGATAAGATAA
TCATCACCGCCATGGACCGCTTCGTCTGGTTCGTCCTACTCGTGGTCATG
TCCCACCTGGTCACCGAGTTCACCCGCGTCTCTGGATATGCGCGTGGCCA
GCGCCACGAGCTGGTGCTGCTGAATGATACGCTGCTGCAGCCCATGCCCG
TGCAGAACATGGTGCTGTACCCCAGCCAGGAGTACGGCCAGTACCAGCAG
CGACCCTCCTCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCTCCTC
CATGGGAGCCATGAGCAGCCTGCAGCAGAACGCGGCATTTTTGCTCAGCA
GCTTGGCGGCGGGAGTGAGTCCGACAAATGGAGCAGCTGCACCCGGCAGC
AACGCGGCCATTTTGTCCCTCGGCGATAGCCAACCGGCTCACACGGCCGA
GAGCACGTATCCCATGTTCAGCTTGCGTCCGCTGATCGACAGCATTTTCG
AGATTCCAATTTCGACGCTGCGTGCTGTTAACAACCTGGTGGGTCGCCTG
ACCGGCGGGTATCGCCAGGCGCCGGCGGAAGTGTCGCAAAAATCCGTGGC
AGCTGGAACGGCGCTGCCGCCCGGCAGGCAAAACCCCACGCTGAGTGCCC
ATCCCAGTGGGCAACGGATGCGCGAGGAGATGGCGTAAAAGCTTTCTAGA
CCAT

BS33072.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9815-RC 672 CG9815-PC 1..672 17..688 3360 100 Plus
CG9815-RB 699 CG9815-PB 56..699 45..688 3220 100 Plus
CG9815-RA 660 CG9815-PA 19..660 47..688 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9815-RC 1108 CG9815-RC 249..920 17..688 3360 100 Plus
CG9815-RD 928 CG9815-RD 94..740 42..688 3235 100 Plus
CG9815-RB 979 CG9815-RB 148..791 45..688 3220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23421948..23422271 502..179 1620 100 Minus
2R 25286936 2R 23421709..23421896 688..501 940 100 Minus
2R 25286936 2R 23422435..23422568 178..45 670 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:50:29 has no hits.

BS33072.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:06:27 Download gff for BS33072.complete
Subject Subject Range Query Range Percent Splice Strand
CG9815-RC 249..918 17..686 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:28 Download gff for BS33072.complete
Subject Subject Range Query Range Percent Splice Strand
CG9815-RC 249..918 17..686 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:28 Download gff for BS33072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23421711..23421894 503..686 100 <- Minus
2R 23421948..23422271 179..502 100 <- Minus
2R 23422435..23422566 47..178 100 <- Minus
2R 23431763..23431792 17..46 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:06:27 Download gff for BS33072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19309471..19309794 179..502 100 <- Minus
arm_2R 19309958..19310089 47..178 100 <- Minus
arm_2R 19319286..19319315 17..46 100   Minus
arm_2R 19309234..19309417 503..686 100 <- Minus

BS33072.pep Sequence

Translation from 16 to 687

> BS33072.pep
MIERRSQLDKIIITAMDRFVWFVLLVVMSHLVTEFTRVSGYARGQRHELV
LLNDTLLQPMPVQNMVLYPSQEYGQYQQRPSSSASASASASASSSMGAMS
SLQQNAAFLLSSLAAGVSPTNGAAAPGSNAAILSLGDSQPAHTAESTYPM
FSLRPLIDSIFEIPISTLRAVNNLVGRLTGGYRQAPAEVSQKSVAAGTAL
PPGRQNPTLSAHPSGQRMREEMA*

BS33072.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9815-PC 223 CG9815-PC 1..223 1..223 1105 100 Plus
CG9815-PB 232 CG9815-PB 18..232 9..223 1059 99.1 Plus
CG9815-PA 219 CG9815-PA 7..219 11..223 1057 100 Plus
CG9815-PD 208 CG9815-PD 1..208 16..223 1036 100 Plus