Clone BS33080 Report

Search the DGRC for BS33080

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:330
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG43393-RA
Protein status:BS33080.pep: gold
Sequenced Size:416

Clone Sequence Records

BS33080.complete Sequence

416 bp assembled on 2014-01-22

GenBank Submission: KX804496

> BS33080.complete
GAAGTTATCAGTCGACATGTGCATGGTCACATCCGTATCCCCCGAAGTCT
GCACCAGCTTCTATGCCACATGGTGCTTAGTTTGGGGGTCCTTGTTTGGG
TTCGGTTACTCGTTCTTGCTCCTTGCCGATCTGATGGAAGTCGTAACAGT
TGACAGAAATTTTCCGTTCCAAAGGACACTCAGGGTGGTCATTGCTGGTT
TGGGACTTTCCTATCTTGGGGCGGGAATTTTAATGACTCTTGGCATAAAA
TACAATAAGCCAATTGTGTTTAAATGTGGAAAGTTCTTGTGCTTAATATT
TGCAATTGGTTCAATTCCGACTATAATCTTTCCTGTTGTGCATTTCTGCA
CAATTCCCTGCTTGTGTCGGTATATGAAAAATCGATGGAACAAGGGCTAA
AAGCTTTCTAGACCAT

BS33080.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG43393-RA 384 CG43393-PA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG43393-RA 1138 CG43393-RA 29..413 17..401 1925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22090427..22090663 253..17 1185 100 Minus
2R 25286936 2R 22090291..22090376 335..250 415 98.8 Minus
2R 25286936 2R 22090148..22090214 401..335 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:50:48 has no hits.

BS33080.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:06:36 Download gff for BS33080.complete
Subject Subject Range Query Range Percent Splice Strand
CG43393-RA 29..410 17..398 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:36 Download gff for BS33080.complete
Subject Subject Range Query Range Percent Splice Strand
CG43393-RA 29..410 17..398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:36 Download gff for BS33080.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22090427..22090663 17..253 100   Minus
2R 22090151..22090213 336..398 100 <- Minus
2R 22090291..22090372 254..335 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:06:36 Download gff for BS33080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17977656..17977718 336..398 100 <- Minus
arm_2R 17977796..17977877 254..335 100 <- Minus
arm_2R 17977932..17978168 17..253 100   Minus

BS33080.pep Sequence

Translation from 16 to 399

> BS33080.pep
MCMVTSVSPEVCTSFYATWCLVWGSLFGFGYSFLLLADLMEVVTVDRNFP
FQRTLRVVIAGLGLSYLGAGILMTLGIKYNKPIVFKCGKFLCLIFAIGSI
PTIIFPVVHFCTIPCLCRYMKNRWNKG*

BS33080.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG43393-PA 127 CG43393-PA 1..127 1..127 689 100 Plus