BS33080.complete Sequence
416 bp assembled on 2014-01-22
GenBank Submission: KX804496
> BS33080.complete
GAAGTTATCAGTCGACATGTGCATGGTCACATCCGTATCCCCCGAAGTCT
GCACCAGCTTCTATGCCACATGGTGCTTAGTTTGGGGGTCCTTGTTTGGG
TTCGGTTACTCGTTCTTGCTCCTTGCCGATCTGATGGAAGTCGTAACAGT
TGACAGAAATTTTCCGTTCCAAAGGACACTCAGGGTGGTCATTGCTGGTT
TGGGACTTTCCTATCTTGGGGCGGGAATTTTAATGACTCTTGGCATAAAA
TACAATAAGCCAATTGTGTTTAAATGTGGAAAGTTCTTGTGCTTAATATT
TGCAATTGGTTCAATTCCGACTATAATCTTTCCTGTTGTGCATTTCTGCA
CAATTCCCTGCTTGTGTCGGTATATGAAAAATCGATGGAACAAGGGCTAA
AAGCTTTCTAGACCAT
BS33080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43393-RA | 384 | CG43393-PA | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43393-RA | 1138 | CG43393-RA | 29..413 | 17..401 | 1925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22090427..22090663 | 253..17 | 1185 | 100 | Minus |
2R | 25286936 | 2R | 22090291..22090376 | 335..250 | 415 | 98.8 | Minus |
2R | 25286936 | 2R | 22090148..22090214 | 401..335 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:50:48 has no hits.
BS33080.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:06:36 Download gff for
BS33080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43393-RA | 29..410 | 17..398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:36 Download gff for
BS33080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43393-RA | 29..410 | 17..398 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:36 Download gff for
BS33080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22090427..22090663 | 17..253 | 100 | | Minus |
2R | 22090151..22090213 | 336..398 | 100 | <- | Minus |
2R | 22090291..22090372 | 254..335 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:06:36 Download gff for
BS33080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17977656..17977718 | 336..398 | 100 | <- | Minus |
arm_2R | 17977796..17977877 | 254..335 | 100 | <- | Minus |
arm_2R | 17977932..17978168 | 17..253 | 100 | | Minus |
BS33080.pep Sequence
Translation from 16 to 399
> BS33080.pep
MCMVTSVSPEVCTSFYATWCLVWGSLFGFGYSFLLLADLMEVVTVDRNFP
FQRTLRVVIAGLGLSYLGAGILMTLGIKYNKPIVFKCGKFLCLIFAIGSI
PTIIFPVVHFCTIPCLCRYMKNRWNKG*
BS33080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43393-PA | 127 | CG43393-PA | 1..127 | 1..127 | 689 | 100 | Plus |