BS33102.complete Sequence
1526 bp assembled on 2014-01-22
GenBank Submission: KX804041
> BS33102.complete
GAAGTTATCAGTCGACATGTGTGTGTGTTTGTGCATGTTTTATGCAGTTC
CTTCGTTTCGTTTTGCTTTGCGGGAGTCTCGCGGCAAGAGACCACTGAAA
ATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGGACCTT
CGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGCTTCAG
AACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGGATGGC
GAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTAAGGCA
GGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGCCATAT
CAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGTTGCAC
GATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTCACGGT
CGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGGAGGAG
GAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCCTGGGC
AGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAGAAGGG
CCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCAGTCCT
CCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACGACGGA
CCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGAGTTGT
GATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTTCGACA
GCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGGAATGC
GCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACCACCGA
GTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGCAAGATCGCTG
TGCACAAGAGCGTGGCCACGTCGCCCATCCAGGACGGAAGCAGCAGTCCC
CAGCCGCAGTCGGCACCATCGGTTATGGATCCTATGCTGGGCGGCAGCGG
TGGCGGCGGAAGCGGCAGCATGCAACGCCGCTCCTCGGGCGCCAAGGGCC
ATGTGCGATTCCTGGACATCGCTCCCGAGCGGGATAGCTCCGAGAGCGAA
ACGGAGAACACGGTGATGGAGGACGACAAGACGACGACGGAGAAGTTTCT
GCTGCTGATCGACCAGTTGTCGGTGGACCAGAAGCGTCACCTCAGCATCA
AGGACATCGGCATCATACTGGAACGCCTCAACTCCAAGATCCTTGACGTG
GAGCGATTGGATCGCGAGTCCGAGTCAGACGACTGCTACAACTGGACGAT
AAAGGCGACAATACGCGGCGATGCGCTGCGCGAACTGGGCGTCATTTACA
ATGGCAATTACTATGCCATCTCTGAGCATCCTGGCTACAAGGAGGAGCTA
GAGGAGAACGGCGAGGAGGTCGAGGAGGAGGAGGAAGAGGATGAGGAGGA
CAGAATTTAGAAGCTTTCTAGACCAT
BS33102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-2-RD | 1494 | CG1975-PD | 1..1494 | 17..1510 | 7470 | 100 | Plus |
| Drep-2-RC | 1449 | CG1975-PC | 12..1449 | 73..1510 | 7190 | 100 | Plus |
| Drep-2-RB | 1650 | CG1975-PB | 213..1650 | 73..1510 | 7190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-2-RD | 1827 | CG1975-RD | 18..1512 | 17..1511 | 7475 | 100 | Plus |
| Drep-2-RC | 5839 | CG1975-RC | 1013..2451 | 73..1511 | 7195 | 100 | Plus |
| Drep-2-RB | 5203 | CG1975-RB | 988..2426 | 73..1511 | 7195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9298266..9299433 | 344..1511 | 5840 | 100 | Plus |
| 2R | 25286936 | 2R | 9297258..9297536 | 66..344 | 1365 | 99.3 | Plus |
| 2R | 25286936 | 2R | 9293626..9293683 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:51:01 has no hits.
BS33102.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:22 Download gff for
BS33102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-2-RD | 18..1511 | 17..1510 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:40 Download gff for
BS33102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-2-RD | 18..1511 | 17..1510 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:40 Download gff for
BS33102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9293626..9293682 | 17..73 | 100 | -> | Plus |
| 2R | 9297266..9297536 | 74..344 | 100 | -> | Plus |
| 2R | 9298267..9299432 | 345..1510 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:22 Download gff for
BS33102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5181131..5181187 | 17..73 | 100 | -> | Plus |
| arm_2R | 5184771..5185041 | 74..344 | 100 | -> | Plus |
| arm_2R | 5185772..5186937 | 345..1510 | 100 | | Plus |
BS33102.pep Sequence
Translation from 16 to 1509
> BS33102.pep
MCVCLCMFYAVPSFRFALRESRGKRPLKIWDSWRNVRKGVVVGTFEELLV
RGKDKLGVPASEPVRVVLECDGTQIEDGEYFRTLANNTVLLLLRQGERWY
PTGVDVIKAAISAIPKIVCETIHALELHDETPSWKIMDNKGRVTVVLHWD
QRQGGGSGGGGGGGGAGGGVGSMCSGLGSSNGLLSSDKYSPSKKGLSAQS
SLDNKSVSSQSSQPRYASPQITVISDDGPASIYHPGGVVLPPGVVIPGGS
RRLSKQGSSFDSTVGVGVGAVHVHTPECAHHAHTPSRAGSPSTTECDFHC
CALHEEGRKIAVHKSVATSPIQDGSSSPQPQSAPSVMDPMLGGSGGGGSG
SMQRRSSGAKGHVRFLDIAPERDSSESETENTVMEDDKTTTEKFLLLIDQ
LSVDQKRHLSIKDIGIILERLNSKILDVERLDRESESDDCYNWTIKATIR
GDALRELGVIYNGNYYAISEHPGYKEELEENGEEVEEEEEEDEEDRI*
BS33102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-2-PD | 497 | CG1975-PD | 1..497 | 1..497 | 2608 | 100 | Plus |
| Drep-2-PC | 482 | CG1975-PC | 2..482 | 17..497 | 2503 | 99.6 | Plus |
| Drep-2-PA | 482 | CG1975-PA | 2..482 | 17..497 | 2503 | 99.6 | Plus |
| Drep-2-PB | 549 | CG1975-PB | 72..549 | 20..497 | 2501 | 100 | Plus |
