BS33104.complete Sequence
686 bp assembled on 2014-01-22
GenBank Submission: KX805544
> BS33104.complete
GAAGTTATCAGTCGACATGCTAAGGTTGTGCCTTCCAACTCGAGCTGGAT
ATGTGCGTAATTTCTCGAACGACAAACCAAGAAAACCCGAAACACACTAT
GAAGTTTTGAATATTCGCAATGATTGCAGCACCCGTGAAGTCCGTAATGC
CTTTGTCCAGCTCTCCAAATTGTACCACCCAGATGTTAAGAGCAATGCTG
CGTGTCCGGAGCGCACAGCCCGATTTGTTCAGATCTCCGAGGCGTACAAG
ACCCTGATAAAGCCGGAGCGGAGGAGAGACTACGATGACAGCCTGCTGTG
GCAGCCATCGCGCTCGGACCGCAGTCCCGTTGGCGAGACGGTCAATCCCG
GCCAGGCGTGGGATGTGAGGCCCAACTACGATCCCAATCCAGGACCGTAC
TATGGCATCCGTGGTCTGAAGAGGGTCTCCAACTGGCAGGTGGCCGTGGT
TCTGATGGCCCTAGGCTTCGTCGGGGCACTCTTTGGCTTCACCTCCGTCA
GGTCGTCCTTTAAACTGAGTCGCCAGATCCAGGACGAAATCTCAGCAGAG
GCTAATTCCCATCATGCCGCCGTTGTGGCCGATGCCCAGAAGTACGGCAA
CGAGGAGCAAGTGCGTCGTATGGTGGACCGTATGTCGCGGAGTCCTTTCA
ACCAGTCTTCGGCTAAGTAAAAGCTTTCTAGACCAT
BS33104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DnaJ-60-RC | 654 | CG42567-PC | 1..654 | 17..670 | 3270 | 100 | Plus |
| DnaJ-60-RA | 654 | CG42567-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DnaJ-60-RC | 1472 | CG42567-RC | 125..778 | 17..670 | 3270 | 100 | Plus |
| DnaJ-60-RA | 822 | CG42567-RA | 125..778 | 17..670 | 3270 | 100 | Plus |
| CG42568-RB | 1472 | CG42568-RB | 125..778 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24158590..24158921 | 503..172 | 1660 | 100 | Minus |
| 2R | 25286936 | 2R | 24158362..24158533 | 670..499 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 24158974..24159092 | 172..54 | 565 | 98.3 | Minus |
| 2R | 25286936 | 2R | 24159145..24159188 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:51:05 has no hits.
BS33104.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:23 Download gff for
BS33104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42568-RB | 125..776 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:42 Download gff for
BS33104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42568-RB | 125..776 | 17..668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:42 Download gff for
BS33104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24158364..24158530 | 502..668 | 100 | <- | Minus |
| 2R | 24158592..24158920 | 173..501 | 100 | <- | Minus |
| 2R | 24158974..24159085 | 61..172 | 100 | <- | Minus |
| 2R | 24159145..24159188 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:23 Download gff for
BS33104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20045887..20046053 | 502..668 | 100 | <- | Minus |
| arm_2R | 20046115..20046443 | 173..501 | 100 | <- | Minus |
| arm_2R | 20046497..20046608 | 61..172 | 100 | <- | Minus |
| arm_2R | 20046668..20046711 | 17..60 | 100 | | Minus |
BS33104.pep Sequence
Translation from 16 to 669
> BS33104.pep
MLRLCLPTRAGYVRNFSNDKPRKPETHYEVLNIRNDCSTREVRNAFVQLS
KLYHPDVKSNAACPERTARFVQISEAYKTLIKPERRRDYDDSLLWQPSRS
DRSPVGETVNPGQAWDVRPNYDPNPGPYYGIRGLKRVSNWQVAVVLMALG
FVGALFGFTSVRSSFKLSRQIQDEISAEANSHHAAVVADAQKYGNEEQVR
RMVDRMSRSPFNQSSAK*
BS33104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DnaJ-60-PC | 217 | CG42567-PC | 1..217 | 1..217 | 1140 | 100 | Plus |
| DnaJ-60-PA | 217 | CG42567-PA | 1..217 | 1..217 | 1140 | 100 | Plus |
| CG8476-PA | 242 | CG8476-PA | 34..127 | 23..121 | 152 | 37.4 | Plus |
