BS33107.complete Sequence
1586 bp assembled on 2014-03-03
GenBank Submission: KX801332
> BS33107.complete
GAAGTTATCAGTCGACATGGAGAATCGCAGTGACTTCGAGGCGGATGACT
ACGGCGACATCAGTTGGAGCAATTGGAGCAACTGGAGCACCCCCGCCGGC
GTCCTTTTCTCGGCCATGAGCAGCGTGCTCTCGGCCAGCAACCATACGCC
TCTGCCGGACTTTGGCCAGGAGCTCGCCCTATCCACCAGCTCCTTCAATC
ACAGCCAGACCCTATCCACCGACCTGCCCGCCGTCGGGGACGTGGAAGAC
GCGGCCGAGGATGCGGCGGCGTCCATGGAGACGGGCTCGTTTGCATTTGT
GGTCCCGTGGTGGCGTCAGGTGCTCTGGAGCATCCTCTTCGGCGGCATGG
TCATTGTGGCGACGGGCGGTAACCTGATTGTTGTCTGGATCGTGATGACG
ACCAAGCGGATGCGGACGGTAACCAACTATTTCATAGTGAATCTCTCCAT
CGCGGACGCCATGGTGTCCAGCCTGAACGTCACCTTCAACTACTACTATA
TGCTGGATAGCGACTGGCCCTTCGGCGAGTTCTACTGCAAGTTGTCCCAG
TTCATCGCGATGCTAAGCATCTGCGCCTCAGTGTTCACCCTAATGGCCAT
CTCCATCGACAGATACGTGGCCATCATCCGGCCACTGCAGCCGCGGATGA
GCAAGCGGTGCAACCTGGCCATCGCGGCGGTCATCTGGCTGGCCTCCACG
CTCATCTCCTGCCCCATGATGATCATCTACCGCACGGAGGAGGTGCCCGT
CCGCGGGCTCAGCAACCGCACGGTCTGCTACCCGGAGTGGCCCGATGGGC
CCACCAATCACTCCACGATGGAGTCCCTCTACAACATCCTCATCATCATT
CTAACCTACTTCCTGCCCATCGTCTCCATGACGGTCACCTACTCGCGCGT
GGGCATCGAGCTCTGGGGATCCAAGACCATCGGCGAGTGCACGCCCCGCC
AGGTGGAGAATGTGCGGAGTAAGCGAAGGGTGGTGAAGATGATGATTGTG
GTCGTCCTGATATTCGCCATCTGCTGGCTGCCGTTCCACAGCTACTTCAT
AATCACATCCTGCTACCCGGCCATCACGGAGGCGCCCTTCATCCAGGAAC
TTTACCTGGCCATCTACTGGCTGGCCATGAGCAACTCCATGTACAATCCC
ATTATATACTGCTGGATGAATTCGCGCTTTCGCTATGGTTTCAAGATGGT
CTTCCGCTGGTGCCTGTTTGTGCGCGTGGGCACTGAACCCTTTAGTCGGC
GGGAGAATCTGACATCCCGGTACTCCTGCTCCGGTTCCCCGGATCACAAT
CGCATCAAGCGCAATGATACCCAGAAATCGATACTTTATACCTGTCCCAG
CTCACCCAAGTCGCATCGAATTTCGCACAGCGGTCGCAGTGCGACGCTGA
GGAACAGTCTGCCGGCGGAGTCATTGTCGTCCGGTGGATCTGGAGGTGGA
GGACACAGGAAACGGTTGTCCTACCAGCAGGAAATGCAGCAGCGGTGGTC
AGGACCCAATAGTGCCACCGCAGTGACCAATTCCAGCAGTACGGCCAACA
CCACCCAACTGCTCTCCTGAAAGCTTTCTAGACCAT
BS33107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TkR99D-RB | 1554 | CG7887-PB | 1..1554 | 17..1570 | 7770 | 100 | Plus |
| TkR99D-RC | 1695 | CG7887-PC | 1..1560 | 17..1570 | 7675 | 99.6 | Plus |
| TkR99D-RA | 1560 | CG7887-PA | 1..1560 | 17..1570 | 7675 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TkR99D-RB | 2874 | CG7887-RB | 613..2167 | 16..1570 | 7775 | 100 | Plus |
| TkR99D-RC | 2880 | CG7887-RC | 613..2173 | 16..1570 | 7680 | 99.6 | Plus |
| TkR99D-RA | 2880 | CG7887-RA | 613..2173 | 16..1570 | 7680 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29959031..29959268 | 437..200 | 1145 | 98.7 | Minus |
| 3R | 32079331 | 3R | 29955029..29955247 | 828..610 | 1095 | 100 | Minus |
| 3R | 32079331 | 3R | 29953290..29953487 | 1176..979 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 29961689..29961883 | 210..16 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 29951503..29951691 | 1570..1382 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 29956535..29956711 | 612..436 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 29954052..29954204 | 981..829 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 29951903..29952043 | 1316..1176 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 29951771..29951839 | 1384..1316 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:04:25 has no hits.
BS33107.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:25:54 Download gff for
BS33107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takr99D-RB | 614..2166 | 17..1569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:30:45 Download gff for
BS33107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TkR99D-RB | 614..2166 | 17..1569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:30:45 Download gff for
BS33107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29961689..29961882 | 17..210 | 100 | | Minus |
| 3R | 29959031..29959257 | 211..437 | 100 | <- | Minus |
| 3R | 29951504..29951690 | 1383..1569 | 100 | <- | Minus |
| 3R | 29951773..29951838 | 1317..1382 | 100 | <- | Minus |
| 3R | 29951903..29952042 | 1177..1316 | 100 | <- | Minus |
| 3R | 29953290..29953486 | 980..1176 | 100 | <- | Minus |
| 3R | 29954054..29954204 | 829..979 | 100 | <- | Minus |
| 3R | 29955029..29955244 | 613..828 | 100 | <- | Minus |
| 3R | 29956535..29956709 | 438..612 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:25:54 Download gff for
BS33107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25787411..25787604 | 17..210 | 100 | | Minus |
| arm_3R | 25784753..25784979 | 211..437 | 100 | <- | Minus |
| arm_3R | 25777226..25777412 | 1383..1569 | 100 | <- | Minus |
| arm_3R | 25777495..25777560 | 1317..1382 | 100 | <- | Minus |
| arm_3R | 25777625..25777764 | 1177..1316 | 100 | <- | Minus |
| arm_3R | 25779012..25779208 | 980..1176 | 100 | <- | Minus |
| arm_3R | 25779776..25779926 | 829..979 | 100 | <- | Minus |
| arm_3R | 25780751..25780966 | 613..828 | 100 | <- | Minus |
| arm_3R | 25782257..25782431 | 438..612 | 100 | <- | Minus |
BS33107.pep Sequence
Translation from 16 to 1569
> BS33107.pep
MENRSDFEADDYGDISWSNWSNWSTPAGVLFSAMSSVLSASNHTPLPDFG
QELALSTSSFNHSQTLSTDLPAVGDVEDAAEDAAASMETGSFAFVVPWWR
QVLWSILFGGMVIVATGGNLIVVWIVMTTKRMRTVTNYFIVNLSIADAMV
SSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFTLMAISIDRY
VAIIRPLQPRMSKRCNLAIAAVIWLASTLISCPMMIIYRTEEVPVRGLSN
RTVCYPEWPDGPTNHSTMESLYNILIIILTYFLPIVSMTVTYSRVGIELW
GSKTIGECTPRQVENVRSKRRVVKMMIVVVLIFAICWLPFHSYFIITSCY
PAITEAPFIQELYLAIYWLAMSNSMYNPIIYCWMNSRFRYGFKMVFRWCL
FVRVGTEPFSRRENLTSRYSCSGSPDHNRIKRNDTQKSILYTCPSSPKSH
RISHSGRSATLRNSLPAESLSSGGSGGGGHRKRLSYQQEMQQRWSGPNSA
TAVTNSSSTANTTQLLS*
BS33107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TkR99D-PB | 517 | CG7887-PB | 1..517 | 1..517 | 2725 | 100 | Plus |
| TkR99D-PC | 564 | CG7887-PC | 1..519 | 1..517 | 2712 | 99.6 | Plus |
| TkR99D-PA | 519 | CG7887-PA | 1..519 | 1..517 | 2712 | 99.6 | Plus |
| TkR86C-PA | 504 | CG6515-PA | 76..448 | 94..476 | 810 | 41.8 | Plus |
| TkR86C-PB | 555 | CG6515-PB | 76..381 | 94..399 | 807 | 47.4 | Plus |
