BS33120.complete Sequence
902 bp assembled on 2014-01-22
GenBank Submission: KX804453
> BS33120.complete
GAAGTTATCAGTCGACATGCGGCACTTACAATTAATGAAATATGTAAACC
CACGGTTTGCAATCAACACGGTTATTACCCAACGCTTAATGTCAAAGTCT
GATGGAAAATCTTCTGGCACAGGATCAAAAGACGCGAAGTGTAAAGGTAC
TAAAGATGCAAAATCTTCAAATGCAGCAAAGAAATCTACTGAAGCAAAGG
CCAAGGCTTCCGATGCGGCAAAGAAAGCGACACCGCCTAAAGCGGCCAAG
GAAACTAAAGTTACGCCGCCAAAGGACGAAACAGCCATAGCCGGAGGATC
AAAATGCCCGCCAAAAGTCCAACCTGTTGCAGAAACTAGTAAAAATAAAA
AGAAACTACAATCGTGTGATGAATTGCTACTAGGTAAAAGTACTCGAAAG
CAGAAGAAACCTCTAACAGCGATCCAAGGAGGGGACCTTGGCTGTCCTGG
CCGGACTGGAAAGAAACCACAAATTGTTGCACAACACTCCAAGCTCTGGC
AGAAAATCTCGCTCTTCGGAGTCCTGCCGATGATAGCCATTCTCACCCTT
TTGGTTTTTAGCACTCGATCGGAAGAGGAGCGTCTTGAGTTTAAGAACTA
TGAGCATATGTACCGGCGGACGAAGCGATACTGGTTTAAGGATGGAAACC
GTACCGCTTTTCACAATAGTCACTTTAATGCTTTGCCTCCAGCCGGATAT
GAGGACGAAGTGGACGAGAGTGGGATTGGACAGGATCCGGAGACGGACAA
GGACAAGAAGGCTCGAATGAAAGAATTCGACAAGGTCGTCAAGAATTGGC
GCAAACACTCGTCTAAAAGGGATGCGCAGCTCAAAAAGGAGGCAGCCGCT
GCTGAAAAAGAGGCTAGAAAACAAGAAGCACAATAAAAGCTTTCTAGACC
AT
BS33120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14077-RB | 870 | CG14077-PB | 1..870 | 17..886 | 4350 | 100 | Plus |
| CG14077-RC | 870 | CG14077-PC | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14077-RB | 3077 | CG14077-RB | 81..950 | 17..886 | 4350 | 100 | Plus |
| CG14077-RC | 1009 | CG14077-RC | 81..950 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18913033..18913448 | 886..471 | 2080 | 100 | Minus |
| 3L | 28110227 | 3L | 18913500..18913744 | 470..226 | 1225 | 100 | Minus |
| 3L | 28110227 | 3L | 18913956..18914070 | 131..17 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 18913806..18913903 | 227..130 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:51:47 has no hits.
BS33120.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:41 Download gff for
BS33120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14077-RC | 81..948 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:04 Download gff for
BS33120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14077-RC | 81..948 | 17..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:04 Download gff for
BS33120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18913035..18913448 | 471..884 | 100 | <- | Minus |
| 3L | 18913500..18913742 | 228..470 | 100 | <- | Minus |
| 3L | 18913806..18913901 | 132..227 | 100 | <- | Minus |
| 3L | 18913956..18914070 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:41 Download gff for
BS33120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18906135..18906548 | 471..884 | 100 | <- | Minus |
| arm_3L | 18906600..18906842 | 228..470 | 100 | <- | Minus |
| arm_3L | 18906906..18907001 | 132..227 | 100 | <- | Minus |
| arm_3L | 18907056..18907170 | 17..131 | 100 | | Minus |
BS33120.pep Sequence
Translation from 16 to 885
> BS33120.pep
MRHLQLMKYVNPRFAINTVITQRLMSKSDGKSSGTGSKDAKCKGTKDAKS
SNAAKKSTEAKAKASDAAKKATPPKAAKETKVTPPKDETAIAGGSKCPPK
VQPVAETSKNKKKLQSCDELLLGKSTRKQKKPLTAIQGGDLGCPGRTGKK
PQIVAQHSKLWQKISLFGVLPMIAILTLLVFSTRSEEERLEFKNYEHMYR
RTKRYWFKDGNRTAFHNSHFNALPPAGYEDEVDESGIGQDPETDKDKKAR
MKEFDKVVKNWRKHSSKRDAQLKKEAAAAEKEARKQEAQ*
BS33120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14077-PB | 289 | CG14077-PB | 1..289 | 1..289 | 1497 | 100 | Plus |
| CG14077-PC | 289 | CG14077-PC | 1..289 | 1..289 | 1497 | 100 | Plus |
| CG30093-PA | 94 | CG30093-PA | 14..92 | 155..234 | 168 | 43.8 | Plus |
