BS33121.complete Sequence
659 bp assembled on 2014-01-22
GenBank Submission: KX801281
> BS33121.complete
GAAGTTATCAGTCGACATGTACTCCCATTTCTTAACAGAGAAAAAGCGTC
GCATATACGATGAGTATGGCAAAGATGGACTGGGCGATCGTGGCCAGAGT
CGCTCGCATGCCCGCCACCATTATAGCACACACGATTTCGATGACTTCGA
TATTTTGGGCGGCTTTCAGTTTGCATTCCGCCCGCCCGAGGAAGTGTTCC
GTGAGTTCTTCGGCATCCACTCGCCCTTCGCCGACTTATTCCGAGATGCC
AATGGACATTCGAATGGCAGCACAAGCGGCTCGAGTGGCAGTCGACGCAA
TGGCGGCAGCAGTGGATCATCTCGCCACCATCATCATCACCACCAGCACA
AAGTGGCCAGTCCGTTCGGGGCTCCAATGCTTAACTACTCAATGATGGAC
TTCTTTATGCCCACCAGCGGCTTCACCTCGTTCTCGTCGATGACCCACGG
CAATGGCAGCAGCGGTGTCACCCACATCTCCAGCGGACCCGGTGCCAGTG
TCAAGCGCACCTCCACTTCGACGGTGTTTGTGAATGGCAAGAAACTGATG
ACCAAACGGGTCGTCGAAAACGGCAAGGAAACTGTCTTTTCATATGAAAA
TGATGTTCTGAAATCAAAGACTGTGATGGGCTCCCTTCAATAGAAGCTTT
CTAGACCAT
BS33121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RF | 627 | CG8448-PF | 1..627 | 17..643 | 3135 | 100 | Plus |
| mrj-RG | 1041 | CG8448-PG | 436..1041 | 38..643 | 3030 | 100 | Plus |
| mrj-RH | 1041 | CG8448-PH | 436..1041 | 38..643 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RF | 2112 | CG8448-RF | 517..1144 | 16..643 | 3140 | 100 | Plus |
| mrj-RG | 2499 | CG8448-RG | 926..1531 | 38..643 | 3030 | 100 | Plus |
| mrj-RH | 2274 | CG8448-RH | 701..1306 | 38..643 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204441..16204756 | 559..244 | 1580 | 100 | Minus |
| 2R | 25286936 | 2R | 16204825..16205054 | 245..16 | 1150 | 100 | Minus |
| 2R | 25286936 | 2R | 16204297..16204382 | 643..558 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:51:50 has no hits.
BS33121.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:44 Download gff for
BS33121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RF | 518..1144 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:05 Download gff for
BS33121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RF | 518..1144 | 17..643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:05 Download gff for
BS33121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16204297..16204381 | 559..643 | 100 | <- | Minus |
| 2R | 16204442..16204754 | 246..558 | 100 | <- | Minus |
| 2R | 16204825..16205053 | 17..245 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:44 Download gff for
BS33121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12091802..12091886 | 559..643 | 100 | <- | Minus |
| arm_2R | 12091947..12092259 | 246..558 | 100 | <- | Minus |
| arm_2R | 12092330..12092558 | 17..245 | 100 | | Minus |
BS33121.pep Sequence
Translation from 16 to 642
> BS33121.pep
MYSHFLTEKKRRIYDEYGKDGLGDRGQSRSHARHHYSTHDFDDFDILGGF
QFAFRPPEEVFREFFGIHSPFADLFRDANGHSNGSTSGSSGSRRNGGSSG
SSRHHHHHHQHKVASPFGAPMLNYSMMDFFMPTSGFTSFSSMTHGNGSSG
VTHISSGPGASVKRTSTSTVFVNGKKLMTKRVVENGKETVFSYENDVLKS
KTVMGSLQ*
BS33121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-PF | 208 | CG8448-PF | 1..208 | 1..208 | 1114 | 100 | Plus |
| mrj-PA | 259 | CG8448-PA | 53..259 | 2..208 | 1076 | 97.6 | Plus |
| mrj-PC | 259 | CG8448-PC | 53..259 | 2..208 | 1076 | 97.6 | Plus |
| mrj-PB | 259 | CG8448-PB | 53..259 | 2..208 | 1076 | 97.6 | Plus |
| mrj-PD | 259 | CG8448-PD | 53..259 | 2..208 | 1076 | 97.6 | Plus |
