BS33123.complete Sequence
800 bp assembled on 2014-01-22
GenBank Submission: KX806192
> BS33123.complete
GAAGTTATCAGTCGACATGAGTACCGATACTTTGATAAAGGCTAAGGACT
CCAGCCAAATATTTATGGATCTGAAGAACCTGTTGTTATGGCGCAATAGC
CGAAAGACTTTGATCGTCTTCACGGGCATCCTGCTCCTCCTGCTGGATGT
GATGGTCCACTCGGTGATCAGTGTGATAAGCATGGTAGGGATCACAGTTC
TCATAGCAGCTATTGGCCATCGCCTTTTGGTACAGTTCTGGAGTATCTGG
AAGAAGGATGAGAACAAAGATCAGATCTTACGTTTCTATCCTCACCCGAA
GATAGAAATCCCCCGGGAGGAGACTCTTTATCTGGCCGGGAAAGCAGTTT
CCCATATTAATTTAATTTTAAACCGTATGATAGAATTGTTGCTGGTGGAA
AAGTGGGAGGATTCCTTGAAGTTCCTAGTTTTGCTCTGCGGCATCAATTT
GCTGGGCGATTGCTTCAACGGATTGACTTTGCTTATATTTGGACACTTGT
TTATTTTTACCGTACCAAAACTGTACGAGTCGTATAAGCCATTCGTTGAT
GTCCAGATCCGAAAGTTCCGTAAATGCAAGATAGATAAATCGAACGTTGA
AAAACCGATTTGTATTCAGAAAGAGTGTCCGCCGGAGTCAGCATACGAGG
GTCAGGAATCCAAAGAGGGCAAAGTACTATATGAGCCATGCGATAATGAG
CCACTTCGAAATCTCCTAGAGCTCCACAAAGGATGTCGTTGTCCTGATTG
CGAGCACCGGTATTTGCCAGTTGAGGCTCGCTAAAAGCTTTCTAGACCAT
BS33123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl2-RC | 768 | CG1279-PC | 1..768 | 17..784 | 3840 | 100 | Plus |
| Rtnl2-RB | 768 | CG1279-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl2-RC | 969 | CG1279-RC | 111..879 | 17..785 | 3845 | 100 | Plus |
| Rtnl2-RB | 948 | CG1279-RB | 90..858 | 17..785 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7529319..7529794 | 492..17 | 2380 | 100 | Minus |
| 3R | 32079331 | 3R | 7528954..7529248 | 785..491 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:51:20 has no hits.
BS33123.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:29 Download gff for
BS33123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl2-RB | 90..855 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:51 Download gff for
BS33123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl2-RB | 90..855 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:51 Download gff for
BS33123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7528957..7529247 | 492..782 | 100 | <- | Minus |
| 3R | 7529320..7529794 | 17..491 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:29 Download gff for
BS33123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3354679..3354969 | 492..782 | 100 | <- | Minus |
| arm_3R | 3355042..3355516 | 17..491 | 100 | | Minus |
BS33123.pep Sequence
Translation from 16 to 783
> BS33123.pep
MSTDTLIKAKDSSQIFMDLKNLLLWRNSRKTLIVFTGILLLLLDVMVHSV
ISVISMVGITVLIAAIGHRLLVQFWSIWKKDENKDQILRFYPHPKIEIPR
EETLYLAGKAVSHINLILNRMIELLLVEKWEDSLKFLVLLCGINLLGDCF
NGLTLLIFGHLFIFTVPKLYESYKPFVDVQIRKFRKCKIDKSNVEKPICI
QKECPPESAYEGQESKEGKVLYEPCDNEPLRNLLELHKGCRCPDCEHRYL
PVEAR*
BS33123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl2-PC | 255 | CG1279-PC | 1..255 | 1..255 | 1338 | 100 | Plus |
| Rtnl2-PB | 255 | CG1279-PB | 1..255 | 1..255 | 1338 | 100 | Plus |
| Rtnl1-PC | 202 | CG33113-PC | 6..202 | 19..216 | 235 | 32.3 | Plus |
| Rtnl1-PG | 224 | CG33113-PG | 28..224 | 19..216 | 235 | 32.3 | Plus |
| Rtnl1-PD | 224 | CG33113-PD | 28..224 | 19..216 | 235 | 32.3 | Plus |
