Clone BS33127 Report

Search the DGRC for BS33127

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:331
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG42560-RA
Protein status:BS33127.pep: gold
Sequenced Size:335

Clone Sequence Records

BS33127.complete Sequence

335 bp assembled on 2014-01-22

GenBank Submission: KX802124

> BS33127.complete
GAAGTTATCAGTCGACATGACCTATCAAACGGATACAATGCTGAAGTTGG
TCGAAAAGCTTTTCCAACTGTTGCGACCCAGGATGTGTCAGTTTTCACAA
TCCAACAAGAACATATCCAAGCATTTGTTCGAAAAAGCCAGGGCGGAGGA
GAACATACATTTCCTTAAACTGCAACGGGAACAGCTGAAGTCGTTGCGAG
AAAAGATTCTCAGCCAGAAGAACGAAGTCACAACAAAGATCATCAAGGTG
GATAAGCAGATACAATCGTTGGAAAAAACCAAGACCGAAGGCTCACAGAT
GAACCATGAACAAAATTAAAAGCTTTCTAGACCAT

BS33127.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42560-RB 282 CG42560-PB 1..282 38..319 1410 100 Plus
CG42560-RA 282 CG42560-PA 1..282 38..319 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42560-RA 880 CG42560-RA 556..858 17..319 1515 100 Plus
CG42559-RA 880 CG42559-RA 556..858 17..319 1515 100 Plus
CG42560-RB 410 CG42560-RB 100..388 31..319 1445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23599548..23599695 319..172 740 100 Minus
2R 25286936 2R 23599879..23599957 109..31 395 100 Minus
2R 25286936 2R 23599757..23599820 172..109 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:52:04 has no hits.

BS33127.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:48 Download gff for BS33127.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RA 556..850 17..311 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:09 Download gff for BS33127.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RA 556..850 17..311 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:09 Download gff for BS33127.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23599556..23599694 173..311 100 <- Minus
2R 23599757..23599820 109..172 100 <- Minus
2R 23599880..23599956 32..108 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:48 Download gff for BS33127.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19487079..19487217 173..311 100 <- Minus
arm_2R 19487280..19487343 109..172 100 <- Minus
arm_2R 19487403..19487479 32..108 100 <- Minus

BS33127.pep Sequence

Translation from 16 to 318

> BS33127.pep
MTYQTDTMLKLVEKLFQLLRPRMCQFSQSNKNISKHLFEKARAEENIHFL
KLQREQLKSLREKILSQKNEVTTKIIKVDKQIQSLEKTKTEGSQMNHEQN
*

BS33127.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG42560-PB 93 CG42560-PB 1..93 8..100 462 100 Plus
CG42560-PA 93 CG42560-PA 1..93 8..100 462 100 Plus