BS33128.complete Sequence
1724 bp assembled on 2014-03-03
GenBank Submission: KX802792
> BS33128.complete
GAAGTTATCAGTCGACATGGCCAACTATGGGGACTACGATAATCTGGATG
CTCTATTAGCCGACCTGCAAAACAGTGTGCCAGGCCAGCCGCAGCAACCT
CAGCCGCAATATGGAACTGTCCAGCCCAAACATCAAGCTCTGCAGCAACA
GCAGTTTGTGGACAACACTCCAGGTTATGGAAGTCTCAGGGGCAAAGCCC
AGCCCCAGGTGTATCAAGAGCACTACAGCGTAGAGACACGCTCCCCAACG
GCTGGACATGATTTTAATGGCTCCTCAACGACTCCGGGATACGCTAACCA
GGGATCGTTGCCACGTCAGGCGGCGGGTGCAAGCACAGGACTCTCAGAAC
TGGACTCCTTGCTGCAGGATCTGCAGAAAATCGATGTACCGGTCAACTAC
AGTACTCCAGTCTCGAAATACAATACGATGAATAGTTATGCCACCGTGGA
GGAGCGTCCTTCAGTGGACAGCCTGCTGAAAGAACTGGACAATGCTCACA
TCTATGCTGTTCCTAACGGATCTGCGCATAAATCTCCGACGCCGGGACGA
CATGTCACCATCACCGTTCGGGAAACGAAGACGGAGAAGTTGACGGGTCC
GGATGGACCAGTTGGCACTGTCGAGGAGCAAATTGTGCAGCAGAAGGATT
CTTATACGCCCAATCATGCTGTTCCGGGACAACAGGTGCATCAGGCCTAT
ACGTCGCAGGCCACCAAGGAACTGGATGATCTGATGGCTTCACTTTCCGA
CTTCAAGGTTAGCAACGGAACAAACGGCATCGGAAACGGCAGTCATCCGC
AACAGCACTCGTCGACAGTGCAGCACCAGACGGTAACCGACTACGCCAGA
CCAAACAAGGGTAGCCAGCAGGCACATCTCACCCAGACGATCGAGGAGAC
GACCATCGTCGAGGACAGTCGCGAGGATCAGTTGGATTCTATGCTAGGCA
ATCTACAGGCCAATATGAGTCGCCAAGGAGTCAATACCGTGCAGAAGGGC
TGCTGCAATGCCTGCGAGAAGCCCATTGTGGGCCAGGTGATCACAGCCCT
GGGCAAGACATGGCATCCGGAGCACTTCACGTGCAACCACTGCAGCCAGG
AGTTGGGCACCCGCAATTTCTTCGAGCGCGACGGCTTCCCGTACTGCGAG
CCGGACTACCACAATCTGTTCAGCCCGCGCTGCGCCTACTGCAACGGCGC
CATTCTGGACAAGTGCGTAACGGCGCTGGACAAGACCTGGCACACGGAGC
ACTTCTTCTGCGCCCAGTGCGGCCAGCAGTTCGGCGAGGAGGGATTCCAT
GAGCGTGACGGCAAGCCGTACTGTCGCAACGACTACTTCGAGATGTTTGC
CCCGAAGTGCAATGGCTGCAACCGCGCCATTATGGAGAACTACATCTCGG
CGCTGAACTCGCAGTGGCATCCGGATTGCTTCGTCTGCAGGGACTGCCGA
CAGCCCTTCCAAGGAGGATCCTTCTTTGATCACGAGGGACTGCCGTACTG
CGAGACGCACTACCATGCCAAGCGAGGATCCCTGTGCGCCGGGTGTTCCA
AACCCATCACCGGACGCTGCATCACGGCCATGTTCAAGAAATTCCACCCG
GAACACTTCGTCTGCGCCTTCTGCCTGAAGCAGTTGAATAAGGGCACTTT
CAAGGAGCAAAAGGACAAGCCATACTGCCACACCTGCTTCGACAAGATAT
TCGGATGAAAGCTTTCTAGACCAT
BS33128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-RH | 1692 | CG31794-PH | 1..1692 | 17..1708 | 8460 | 100 | Plus |
| Pax-RK | 1746 | CG31794-PK | 81..1746 | 43..1708 | 8330 | 100 | Plus |
| Pax-RJ | 1746 | CG31794-PJ | 81..1746 | 43..1708 | 8330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-RH | 2097 | CG31794-RH | 80..1773 | 16..1709 | 8470 | 100 | Plus |
| Pax-RK | 2255 | CG31794-RK | 237..1903 | 43..1709 | 8335 | 100 | Plus |
| Pax-RJ | 2253 | CG31794-RJ | 263..1929 | 43..1709 | 8335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19403998..19404688 | 1442..752 | 3440 | 99.9 | Minus |
| 2L | 23513712 | 2L | 19401105..19401373 | 1709..1441 | 1345 | 100 | Minus |
| 2L | 23513712 | 2L | 19410248..19410414 | 377..211 | 835 | 100 | Minus |
| 2L | 23513712 | 2L | 19410480..19410644 | 211..47 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 19409402..19409552 | 759..609 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 19409769..19409910 | 519..378 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 19409612..19409704 | 611..519 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 21199830..21199885 | 1093..1038 | 190 | 89.3 | Minus |
| 2L | 23513712 | 2L | 21202145..21202200 | 1093..1038 | 190 | 89.3 | Minus |
Blast to na_te.dros performed 2014-11-28 15:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6702..6814 | 42..154 | 123 | 62.4 | Plus |
BS33128.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:25:57 Download gff for
BS33128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RH | 81..1771 | 17..1707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:30:49 Download gff for
BS33128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RH | 81..1771 | 17..1707 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:30:49 Download gff for
BS33128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19409404..19409549 | 612..757 | 100 | <- | Minus |
| 2L | 19409612..19409703 | 520..611 | 100 | <- | Minus |
| 2L | 19409769..19409910 | 378..519 | 100 | <- | Minus |
| 2L | 19410248..19410413 | 212..377 | 100 | <- | Minus |
| 2L | 19410480..19410643 | 48..211 | 100 | <- | Minus |
| 2L | 19410845..19410875 | 17..47 | 100 | | Minus |
| 2L | 19401107..19401372 | 1442..1707 | 100 | <- | Minus |
| 2L | 19403999..19404682 | 758..1441 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:25:57 Download gff for
BS33128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19401107..19401372 | 1442..1707 | 100 | <- | Minus |
| arm_2L | 19403999..19404682 | 758..1441 | 100 | <- | Minus |
| arm_2L | 19409404..19409549 | 612..757 | 100 | <- | Minus |
| arm_2L | 19409612..19409703 | 520..611 | 100 | <- | Minus |
| arm_2L | 19409769..19409910 | 378..519 | 100 | <- | Minus |
| arm_2L | 19410248..19410413 | 212..377 | 100 | <- | Minus |
| arm_2L | 19410480..19410643 | 48..211 | 100 | <- | Minus |
| arm_2L | 19410845..19410875 | 17..47 | 100 | | Minus |
BS33128.pep Sequence
Translation from 16 to 1707
> BS33128.pep
MANYGDYDNLDALLADLQNSVPGQPQQPQPQYGTVQPKHQALQQQQFVDN
TPGYGSLRGKAQPQVYQEHYSVETRSPTAGHDFNGSSTTPGYANQGSLPR
QAAGASTGLSELDSLLQDLQKIDVPVNYSTPVSKYNTMNSYATVEERPSV
DSLLKELDNAHIYAVPNGSAHKSPTPGRHVTITVRETKTEKLTGPDGPVG
TVEEQIVQQKDSYTPNHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSN
GTNGIGNGSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVED
SREDQLDSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITALGKTWH
PEHFTCNHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAILDKC
VTALDKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNG
CNRAIMENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYH
AKRGSLCAGCSKPITGRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKD
KPYCHTCFDKIFG*
BS33128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-PH | 563 | CG31794-PH | 1..563 | 1..563 | 3110 | 100 | Plus |
| Pax-PC | 557 | CG31794-PC | 2..557 | 8..563 | 3064 | 99.8 | Plus |
| Pax-PK | 581 | CG31794-PK | 22..581 | 5..563 | 3058 | 99.1 | Plus |
| Pax-PJ | 581 | CG31794-PJ | 22..581 | 5..563 | 3058 | 99.1 | Plus |
| Pax-PA | 581 | CG31794-PA | 22..581 | 5..563 | 3058 | 99.1 | Plus |
