BS33131.complete Sequence
1136 bp assembled on 2014-01-22
GenBank Submission: KX802317
> BS33131.complete
GAAGTTATCAGTCGACATGCAAGTGAGAACTCCGTTTGTTGCATTGGATC
AACGATCACCGTTGACGGTGGATTCCTCCTGCCCCAAACGAAAAAAATGC
GATATGGACCGAGAGCGCGAAAGAGATGTCAAGGCCCTGGAGCCACGCGA
CTTATCCTCCACGGGCCGCATTTACGCCAGAAGCGATATTAAAATCAGCT
CCTCGCCAACCGTCTCGCCAACGATCTCAAACTCCTCTTCGCCCACACCG
ACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGGGCTTGCCCGGAGCGGT
GGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCATCGGCGGGGGCCAGTT
CCTATTTGCACGGCAACCACAAGCCCATCACCGGGATTCCGTGTGTGGCC
GCCGCCTCCCGCTATACGGCGCCCGTTCACATCGACGTGGGCGGGACCAT
CTACACCAGCTCACTGGAGACGCTCACCAAGTACCCGGAGTCGAAGCTGG
CCAAGCTCTTCAATGGCCAGATACCCATCGTGCTGGACTCGCTGAAGCAG
CACTATTTCATCGATCGCGACGGGGGCATGTTCCGCCACATTCTGAACTT
TATGAGAAACTCAAGACTTCTGATTGCCGAGGATTTTCCCGACCTGGAGC
TGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGAGCCGATGATTAAGCAG
CTGGAAAGCATGCGCAAGGATCGCGTTCGCAATGGCAACTATTTGGTGGC
GCCACCCACTCCACCGGCTCGCCACATCAAGACGAGCCCGAGGACCAGCG
CATCGCCGGAGTGCAATTACGAGGTAGTGGCGCTGCACATCTCGCCAGAC
CTTGGCGAACGCATAATGCTGTCGGCAGAACGGGCTCTGCTCGACGAGCT
CTTCCCGGAGGCCAGCCAAGCGACACAGTCGAGTCGCAGCGGAGTGTCCT
GGAACCAGGGCGACTGGGGGCAAATCATTCGCTTCCCCCTCAACGGCTAC
TGCAAGCTGAACTCGGTGCAGGTGCTCACCCGACTCCTCAACGCCGGCTT
CACCATCGAGGCCAGCGTTGGGGGCCAGCAGTTCTCCGAGTATCTGCTGG
CGCGACGCGTTCCAATGTGAAAGCTTTCTAGACCAT
BS33131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10440-RB | 1104 | CG10440-PB | 1..1104 | 17..1120 | 5505 | 99.9 | Plus |
| CG10440-RA | 1017 | CG10440-PA | 1..1017 | 104..1120 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10440-RB | 2451 | CG10440-RB | 436..1539 | 17..1120 | 5505 | 99.9 | Plus |
| CG10440-RA | 2350 | CG10440-RA | 346..1438 | 28..1120 | 5450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21561794..21562284 | 686..196 | 2455 | 100 | Minus |
| 2R | 25286936 | 2R | 21561158..21561591 | 1120..687 | 2170 | 100 | Minus |
| 2R | 25286936 | 2R | 21562544..21562650 | 198..92 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 21570762..21570826 | 90..26 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 3215..3273 | 720..781 | 113 | 69.4 | Plus |
BS33131.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:51 Download gff for
BS33131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10440-RB | 436..1538 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:13 Download gff for
BS33131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10440-RB | 436..1538 | 17..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:13 Download gff for
BS33131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21561159..21561591 | 687..1119 | 100 | <- | Minus |
| 2R | 21561794..21562281 | 199..686 | 100 | <- | Minus |
| 2R | 21562544..21562651 | 91..198 | 99 | <- | Minus |
| 2R | 21570762..21570829 | 21..90 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:51 Download gff for
BS33131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17448664..17449096 | 687..1119 | 100 | <- | Minus |
| arm_2R | 17449299..17449786 | 199..686 | 100 | <- | Minus |
| arm_2R | 17450049..17450156 | 91..198 | 99 | <- | Minus |
| arm_2R | 17458267..17458334 | 21..90 | 95 | | Minus |
BS33131.pep Sequence
Translation from 16 to 1119
> BS33131.pep
MQVRTPFVALDQRSPLTVDSSCPKRKKCDMDRERERDVKALEPRDLSSTG
RIYARSDIKISSSPTVSPTISNSSSPTPTPPASSSVTPLGLPGAVAAAAA
AVGGASSAGASSYLHGNHKPITGIPCVAAASRYTAPVHIDVGGTIYTSSL
ETLTKYPESKLAKLFNGQIPIVLDSLKQHYFIDRDGGMFRHILNFMRNSR
LLIAEDFPDLELLLEEARYYEVEPMIKQLESMRKDRVRNGNYLVAPPTPP
ARHIKTSPRTSASPECNYEVVALHISPDLGERIMLSAERALLDELFPEAS
QATQSSRSGVSWNQGDWGQIIRFPLNGYCKLNSVQVLTRLLNAGFTIEAS
VGGQQFSEYLLARRVPM*
BS33131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10440-PB | 367 | CG10440-PB | 1..367 | 1..367 | 1881 | 100 | Plus |
| CG10440-PA | 338 | CG10440-PA | 1..338 | 30..367 | 1727 | 100 | Plus |
| CG10830-PA | 228 | CG10830-PA | 5..104 | 137..236 | 172 | 38.6 | Plus |
