BS33136.complete Sequence
821 bp assembled on 2014-01-22
GenBank Submission: KX802892
> BS33136.complete
GAAGTTATCAGTCGACATGAAAGCATTCATAGCTATCCTGGCTTTGGCTG
TGGCCTCGGCCTCTGGCGCCACCATGCCCCGTTTGGCCACCGAGAAACTG
ACCCCGGTCCACACCAAGGACATGCAGGGTCGCATCACCAACGGCTATCC
GGCTGAGGAGGGCAAGGCTCCCTACACCGTCGGTCTGGGCTTCAGCGGCG
GCTGGTGGTGCGGTGGTTCGATCATCGCACACGATTGGGTGCTCACCGCC
GAGCACTGCATCGGAGATGCTGACTCCGTAACTGTCTACTTCGGAGCCAC
CTGGCGCACCAACGCCCAGTTCACCCACTGGGTTGGCAACGGTAACTTTA
TCAAGCACTCATCCGCCGATATTGCCCTCATCCGCATTCCCCACGTGGAC
TTCTGGCACATGGTGAACAAGGTGGAGCTGCCCAGCTACAACGATCGCTA
CAACGACTACAACGAATGGTGGGCTGTTGCCTGCGGCTGGGGAGGCACCT
ATGACGGCAGCCCACTGCCCGACTACCTGCAGTGTGTCGATCTCCAGATC
ATCCACAACTCCGAGTGCTCCGGATACTATGGAAGCGTGGGAGACAACAT
CCTCTGTGTCAGGACTCCCGACGGCAAGTCCACCTGCGGTGGTGACTCCG
GCGGCCCCCTGGTCACCCATGACGGTACCAAGCTTGTGGGGGTCACCAAC
TTTGGTTCCGTCGCCGGCTGCCAGTCGGGTGCTCCCGCTGGATTCCAGCG
TGTCACCTACCACCTGGACTGGATTCGCGACCATACCGGCATTGCTTACT
ACTAAAAGCTTTCTAGACCAT
BS33136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon66Cii-RA | 789 | CG7170-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
| Jon66Ci-RA | 783 | CG7118-PA | 101..783 | 126..805 | 2160 | 88.3 | Plus |
| Jon25Biii-RA | 777 | CG8871-PA | 101..776 | 126..801 | 1730 | 83.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon66Cii-RA | 830 | CG7170-RA | 2..792 | 15..805 | 3955 | 100 | Plus |
| Jon66Ci-RA | 838 | CG7118-RA | 119..801 | 126..805 | 2160 | 88.3 | Plus |
| Jon25Biii-RA | 827 | CG8871-RA | 120..795 | 126..801 | 1730 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8392858..8393648 | 805..15 | 3955 | 100 | Minus |
| 3L | 28110227 | 3L | 8391658..8392340 | 126..805 | 2160 | 88.3 | Plus |
| 2L | 23513712 | 2L | 4949973..4950648 | 801..126 | 1730 | 83.7 | Minus |
| 3R | 32079331 | 3R | 30487110..30487524 | 792..375 | 540 | 75.8 | Minus |
| 3R | 32079331 | 3R | 30489367..30489781 | 375..792 | 510 | 75.4 | Plus |
| 3R | 32079331 | 3R | 29923800..29924214 | 792..375 | 495 | 75.1 | Minus |
| 3R | 32079331 | 3R | 29922615..29923029 | 375..792 | 480 | 74.9 | Plus |
| 2L | 23513712 | 2L | 4954323..4954758 | 805..367 | 445 | 74.5 | Minus |
| 2L | 23513712 | 2L | 4954815..4955009 | 328..140 | 400 | 81.5 | Minus |
| 2R | 25286936 | 2R | 8691843..8691968 | 367..492 | 315 | 83.3 | Plus |
| 3L | 28110227 | 3L | 6053938..6054145 | 492..285 | 290 | 76 | Minus |
| 3R | 32079331 | 3R | 29924350..29924523 | 260..93 | 280 | 78.7 | Minus |
| 3L | 28110227 | 3L | 6052750..6052857 | 367..474 | 270 | 83.3 | Plus |
| 3R | 32079331 | 3R | 29922306..29922479 | 93..260 | 265 | 78.2 | Plus |
| 2L | 23513712 | 2L | 4952294..4952469 | 792..617 | 250 | 76.1 | Minus |
| 2L | 23513712 | 2L | 4952785..4952996 | 328..126 | 245 | 75.5 | Minus |
| 3R | 32079331 | 3R | 30489090..30489231 | 125..260 | 225 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:51:55 has no hits.
BS33136.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:44 Download gff for
BS33136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Cii-RA | 4..790 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:06 Download gff for
BS33136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Cii-RA | 4..790 | 17..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:06 Download gff for
BS33136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8392860..8393646 | 17..803 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:44 Download gff for
BS33136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8385960..8386746 | 17..803 | 100 | | Minus |
BS33136.pep Sequence
Translation from 16 to 804
> BS33136.pep
MKAFIAILALAVASASGATMPRLATEKLTPVHTKDMQGRITNGYPAEEGK
APYTVGLGFSGGWWCGGSIIAHDWVLTAEHCIGDADSVTVYFGATWRTNA
QFTHWVGNGNFIKHSSADIALIRIPHVDFWHMVNKVELPSYNDRYNDYNE
WWAVACGWGGTYDGSPLPDYLQCVDLQIIHNSECSGYYGSVGDNILCVRT
PDGKSTCGGDSGGPLVTHDGTKLVGVTNFGSVAGCQSGAPAGFQRVTYHL
DWIRDHTGIAYY*
BS33136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon66Cii-PA | 262 | CG7170-PA | 1..262 | 1..262 | 1464 | 100 | Plus |
| Jon66Ci-PA | 260 | CG7118-PA | 1..260 | 1..262 | 1198 | 82.2 | Plus |
| Jon25Biii-PA | 258 | CG8871-PA | 1..258 | 1..261 | 1192 | 83.5 | Plus |
| Jon99Ciii-PB | 265 | CG31362-PB | 1..265 | 1..261 | 926 | 65.6 | Plus |
| Jon99Ciii-PA | 265 | CG31362-PA | 1..265 | 1..261 | 926 | 65.6 | Plus |
