Clone BS33139 Report

Search the DGRC for BS33139

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:331
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG17734-RC
Protein status:BS33139.pep: gold
Sequenced Size:353

Clone Sequence Records

BS33139.complete Sequence

353 bp assembled on 2014-01-22

GenBank Submission: KX801860

> BS33139.complete
GAAGTTATCAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGG
ATGCCGCTCAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTC
ATGCTTGTGGGTGAGTTTTGCCAATTTCCGGACAGCGAAAGTTTTGCCGC
CGTGACGTCACATGGAAACTTTTGGCTCAGCAGCCAGCTAGATACGCACA
TATCTACACACATTTACGAATGTACATTGCGTGTGCGGCGGGGAAGTCGG
CTAATCTTGACCTTGGCCATGAGTTTAACGTCAATTTGGGGTCACTTTTT
GATGTCACTGTGTGACATAACGGTGAATGCAGTATGAAAGCTTTCTAGAC
CAT

BS33139.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-RC 321 CG17734-PC 1..321 17..337 1605 100 Plus
CG17734-RB 288 CG17734-PB 1..96 17..112 480 100 Plus
CG17734-RA 306 CG17734-PA 1..96 17..112 480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-RC 1317 CG17734-RC 125..445 17..337 1605 100 Plus
CG17734-RB 1024 CG17734-RB 125..220 17..112 480 100 Plus
CG17734-RA 764 CG17734-RA 125..220 17..112 480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11243555..11243875 337..17 1605 100 Minus
2R 25286936 2R 10420908..10421003 112..17 210 81.2 Minus
Blast to na_te.dros performed on 2014-11-28 14:52:27 has no hits.

BS33139.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:57 Download gff for BS33139.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RC 125..444 17..336 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:20 Download gff for BS33139.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RC 125..444 17..336 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:20 Download gff for BS33139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11243556..11243875 17..336 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:57 Download gff for BS33139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7069278..7069597 17..336 100   Minus

BS33139.pep Sequence

Translation from 16 to 336

> BS33139.pep
MSSKSLFDSEEDAAQANKLSRKAKESPFMLVGEFCQFPDSESFAAVTSHG
NFWLSSQLDTHISTHIYECTLRVRRGSRLILTLAMSLTSIWGHFLMSLCD
ITVNAV*

BS33139.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-PC 106 CG17734-PC 1..106 1..106 545 100 Plus
CG17734-PB 95 CG17734-PB 1..32 1..32 154 100 Plus
CG17734-PA 101 CG17734-PA 1..32 1..32 154 100 Plus