BS33146.complete Sequence
1652 bp assembled on 2014-03-06
GenBank Submission: KX800254
> BS33146.complete
GAAGTTATCAGTCGACATGTGCGCTATGGTAATGCAGTTGGACACCAAGG
TTCGCATGGTCACATCCTCCTCCAACGACAACAGTGGTAGCGGCGGCGCC
AGTGGCGGTACAAGCGGAGCGGGCGGAGGAAACGGCGGTGGCGGTGTGGT
TTCGGTGCCCGTATCCCTGCCCATCGGTTCGATGATAACCGGCACTACCT
TCAATGTGATCACGCCCGACCAGCTGCCCCCTCACTTCAAGCCGATGCTG
TGCGTCGACAACAATGGCTACCTGTCCGGCAGCACGGTCAGCATGGGCAA
CGACCTCAAGACGATCGTCATCCAGCAACAGCAGACGCAACCAGGCGGCG
GCGGTGGCGGCGCCAATAATGCGGGCACCAATACGACCGCCACAAATACG
ATTGGACTGAATCACGATGGCTCCGGGAGCAACAATAGCCACGACAGCCT
GGCCACCTTGGAGCACGCCGCGGGCGGAGCGAGTGGCGTCGGCGGTGGCG
GCGGCGGAACGGGTGGTGGCTCCTCGGGATGGTCGGAGAACCCGTCAACC
CAGCACAATGAGGTCTTCCAGATCCGCTGCAAAACCACCTGCGCCGAGTT
ATACCGCAGCAAGCTGGGCTCCGGCGGCCGTGGACGCTGTGTGAAGTACA
AGGACAAGTGGCATACGCCCAGTGAGTTTGAGCATGTGTGTGGCCGGGGC
TCCAGCAAGGATTGGAAGCGTTCGATCAAGTACGGCGGCAAATCGCTGCA
GTCCCTCATCGATGAGGGTACGCTCACGCCGCACGCGACCAACTGCAGCT
GCACCGTCTGCTGCGACGACGAAGCAGGTGAGTCAGCTTCCGGCCCTGTC
CGTCTCTTTACACCGTACAAGCGGCGGAAGCGGAATCAAACTGATCTCGA
TATGGAGTCTGGACCCAAACGCAAGCGTAACACCCATCATAGTAACAACA
ACAACAGTAACACCAATAACAACAACACGAGCGGGAGCGGCGCCAACAAC
TGTGTGGATGTAACTGCAGCTGTGGCTGCTGCAACAGCCAGCGTGGTGGA
CGAGAACAACATGTTCCTGTCGGAAGAGAACATCACGTCCAAGGATGAGC
CGTGGGCAGCGCTCAACGACAGCCTGGACACCTCCACCGAGCTGGTCGAT
CAGTCGCAGATGGGCAACACGTACGAACGGGAAACGTTTGTGGTGAACAT
CAACGATGGATCCTCCATCGCCGTCCTGGACACCAGCCAGTCGATGAAGA
ACATCGAGCACGTGTACTGCACCATGGTCAAGGCCACCAATGACTTCAAA
CGCATGCTTAACGACATGAAGCAGTCCTTCGAGCGTCGCATCGAGGTTCT
GCAAAAGGAGCGCGATGCAGCGGTCAGCGCGATGCGTGTCCAAGTGCACG
CGGACATCGATGATCCAAATATTTCAGGCTCCCTGCACGGCAACGAGATC
ATTTCGGCTAAGAAGTGCGCCAACTGTAACCGCGAAGCATTGGCCGAGTG
CTCACTGTGCCGAAAGACGCCGTACTGCTCGGAGTTCTGCCAGCGGAAGG
ATTGGAATGCTCACCAGGTGGAGTGCACAAGGAATCCACAAACGACAACG
CAGCAGGTCATGCTGTTGATCGACGATCAGTCCTAAAAGCTTTCTAGACC
AT
BS33146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Deaf1-RC | 1620 | CG8567-PC | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| Deaf1-RD | 1731 | CG8567-PD | 130..1731 | 35..1636 | 8010 | 100 | Plus |
| Deaf1-RA | 1731 | CG8567-PA | 130..1731 | 35..1636 | 8010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Deaf1-RC | 2042 | CG8567-RC | 90..1709 | 17..1636 | 8100 | 100 | Plus |
| Deaf1-RD | 3588 | CG8567-RD | 491..2092 | 35..1636 | 8010 | 100 | Plus |
| Deaf1-RA | 2425 | CG8567-RA | 491..2092 | 35..1636 | 8010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19819191..19820010 | 17..836 | 4100 | 100 | Plus |
| 3L | 28110227 | 3L | 19828315..19828945 | 835..1465 | 3155 | 100 | Plus |
| 3L | 28110227 | 3L | 19829018..19829190 | 1464..1636 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:07:06 has no hits.
BS33146.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-06 11:09:59 Download gff for
BS33146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RC | 90..1707 | 17..1634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:42 Download gff for
BS33146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RC | 90..1707 | 17..1634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:42 Download gff for
BS33146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19819191..19820010 | 17..836 | 100 | -> | Plus |
| 3L | 19828317..19828945 | 837..1465 | 100 | -> | Plus |
| 3L | 19829020..19829188 | 1466..1634 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-06 11:09:59 Download gff for
BS33146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19812291..19813110 | 17..836 | 100 | -> | Plus |
| arm_3L | 19821417..19822045 | 837..1465 | 100 | -> | Plus |
| arm_3L | 19822120..19822288 | 1466..1634 | 100 | | Plus |
BS33146.pep Sequence
Translation from 16 to 1635
> BS33146.pep
MCAMVMQLDTKVRMVTSSSNDNSGSGGASGGTSGAGGGNGGGGVVSVPVS
LPIGSMITGTTFNVITPDQLPPHFKPMLCVDNNGYLSGSTVSMGNDLKTI
VIQQQQTQPGGGGGGANNAGTNTTATNTIGLNHDGSGSNNSHDSLATLEH
AAGGASGVGGGGGGTGGGSSGWSENPSTQHNEVFQIRCKTTCAELYRSKL
GSGGRGRCVKYKDKWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDE
GTLTPHATNCSCTVCCDDEAGESASGPVRLFTPYKRRKRNQTDLDMESGP
KRKRNTHHSNNNNSNTNNNNTSGSGANNCVDVTAAVAAATASVVDENNMF
LSEENITSKDEPWAALNDSLDTSTELVDQSQMGNTYERETFVVNINDGSS
IAVLDTSQSMKNIEHVYCTMVKATNDFKRMLNDMKQSFERRIEVLQKERD
AAVSAMRVQVHADIDDPNISGSLHGNEIISAKKCANCNREALAECSLCRK
TPYCSEFCQRKDWNAHQVECTRNPQTTTQQVMLLIDDQS*
BS33146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Deaf1-PC | 539 | CG8567-PC | 1..539 | 1..539 | 2868 | 100 | Plus |
| Deaf1-PE | 536 | CG8567-PE | 1..536 | 1..539 | 2839 | 99.4 | Plus |
| Deaf1-PD | 576 | CG8567-PD | 44..576 | 7..539 | 2836 | 100 | Plus |
| Deaf1-PA | 576 | CG8567-PA | 44..576 | 7..539 | 2836 | 100 | Plus |
| Deaf1-PB | 573 | CG8567-PB | 44..573 | 7..539 | 2807 | 99.4 | Plus |
