BS33148.complete Sequence
761 bp assembled on 2014-01-22
GenBank Submission: KX804373
> BS33148.complete
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTCCAAGCAAGAAAGCAAG
AGTTTCGTGAGAGAGCTTCAAAGGGAGCGAGAAGAGCATCAACTAAAAGA
AAAACAAAACCTAAGCCATGAAGGTCAAGACCAAGAGTGCAAAGGCTCCC
TGGCTGTTCCTGAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGC
ATAAAGGGCATGCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCA
GTACTTGGCCATGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTG
GATTCGCCGAGCACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGA
TCCAAGCTGGTGGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGT
CAGCGATCTGATCAATGTGCCGACTGTGGCCAAGCAGGAGTGGACCGATG
GTGCCGCCGCCCTGTCCGACGCCCTCGACCTGGAGATCAAGGTGACCAAG
TCCATCCGCAAGCTGATCCAGACCTGCGAGAACAAGCCCTACAACCACTA
CCACCTGGTGGACTACCTGACCGGTGTCTATCTGGAGGAGCAGCTCCACG
GACAGCGCGAGCTCGCCGGCAAGCTGACCACTCTCAAGAAGATGATGGAC
ACCAACGGCGAACTGGGCGAGTTCCTGTTCGACAAGACCCTGTAAAAGCT
TTCTAGACCAT
BS33148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-RG | 729 | CG2216-PG | 1..729 | 17..745 | 3645 | 100 | Plus |
Fer1HCH-RF | 729 | CG2216-PF | 1..729 | 17..745 | 3645 | 100 | Plus |
Fer1HCH-RI | 738 | CG2216-PI | 1..738 | 17..745 | 3520 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-RG | 1246 | CG2216-RG | 107..835 | 17..745 | 3645 | 100 | Plus |
Fer1HCH-RF | 981 | CG2216-RF | 71..799 | 17..745 | 3645 | 100 | Plus |
Fer1HCH-RI | 1009 | CG2216-RI | 90..827 | 17..745 | 3520 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:52:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30386319..30386598 | 472..193 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 30385984..30386257 | 745..472 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 30386717..30386828 | 195..84 | 560 | 100 | Minus |
3R | 32079331 | 3R | 30387464..30387530 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:52:21 has no hits.
BS33148.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:26:54 Download gff for
BS33148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RF | 71..797 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:16 Download gff for
BS33148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RF | 71..797 | 17..743 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:16 Download gff for
BS33148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30385986..30386256 | 473..743 | 100 | <- | Minus |
3R | 30386319..30386596 | 195..472 | 100 | <- | Minus |
3R | 30386718..30386828 | 84..194 | 100 | <- | Minus |
3R | 30387464..30387530 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:26:54 Download gff for
BS33148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26211708..26211978 | 473..743 | 100 | <- | Minus |
arm_3R | 26212041..26212318 | 195..472 | 100 | <- | Minus |
arm_3R | 26212440..26212550 | 84..194 | 100 | <- | Minus |
arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BS33148.pep Sequence
Translation from 16 to 744
> BS33148.pep
MVKLIASLLLLAVVAQAYGDFKSKQESKSFVRELQREREEHQLKEKQNLS
HEGQDQECKGSLAVPEITKDWVDMKDACIKGMRNQIQEEINASYQYLAMG
AYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGQLTEGVSDLIN
VPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTCENKPYNHYHLVDY
LTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFLFDKTL*
BS33148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-PG | 242 | CG2216-PG | 1..242 | 1..242 | 1243 | 100 | Plus |
Fer1HCH-PF | 242 | CG2216-PF | 1..242 | 1..242 | 1243 | 100 | Plus |
Fer1HCH-PI | 245 | CG2216-PI | 1..245 | 1..242 | 1229 | 98.8 | Plus |
Fer1HCH-PD | 205 | CG2216-PD | 1..205 | 1..242 | 997 | 84.3 | Plus |
Fer1HCH-PC | 205 | CG2216-PC | 1..205 | 1..242 | 997 | 84.3 | Plus |