BS33155.complete Sequence
2276 bp assembled on 2014-03-06
GenBank Submission: KX805099
> BS33155.complete
GAAGTTATCAGTCGACATGGAGTCGCGCCTGGCTTGGAAGAGATACACCT
CATATCCACAACCCCTTCGTCATCGTGTGGTGCTTATTGGATGGGCTTTA
ATATGGACTATGTCCCTAAACTCTGTATTCTGTGGAGAAAAATTGGCTTT
ACTGTCGGCCACCTTGCGGACATATCAAAAAGCGGCATGTGACTCGGATC
AAGTGCTTATAGCCTGTCCCCGTGGTACTAGTATTTCAATCGAGTTTGCC
CAGTACAATAAGTTTGTTGCGAAAGACGGCTACAGTATTGAAGAATTATG
TCCTGGGTCTGGGGAAATAAGATCGGAAATCCGGGGTAGAACAAAGCACC
TTCTTCGCGGATCGATCTTTGGCTCACCACCACTAAAAACACCGTCTAGC
AAATACATGACTGCTGGCCACTCCCTTGCAGTCCCAGTACAATCTGTTCC
TGAATTCAACAGTAGCAGTGCCACTAGCTCCGAATCAATTTCAAGCGTGT
CCCCTTCAGTTGATGATATTCAAAGTACTGATTACAATACTGACAACGCT
TCCGAGAACTGCATGTGGCCAAATGCATTACAGTACTCCTTACTGCAAAC
TGTCGTCGAGGCCTGCCAAAAAAAGAAGCACTGCAAGTTCCACGGATCCC
CAGAGTTCTACGGCCAGGGCTCCAGTGGTGTGGGCGACTCGTCTGGAACC
AGCAGCTACCACAGCAGCACAGCCAGCTCCAATGCAATAAGCAACGATCC
TTGTCCAAAACGCAAAAAAATTGTCGAAGTCGCTTACAAATGTCGCCCAT
ATGAGTTCCGAAGTAAGGTGGCTTGTCACAATGATGTAGCACAACTAGAG
TGCAATCCTTACTCCCGTATAGCCGTATATAGTGCCAGCTTTGGAAGAAC
CGAGTACGAGAGCATTCAGTGTCCCCAACCGCAAGGAGTTCGAGAAGAAA
CTTGTCTCGCTTCATATGCCACGGAGACTGTAATGCAAATTTGCCATGGT
AGACGTCGATGCAACCTTGCAGCCGACGCAAATACTTTTGGAAGCCCTTG
CCAACCAAATTCCCGAATGTACTTGAAAGTTGTTTATACGTGCGTGCCAA
AGCAAGTCCTAAAAGAAAACAAGGCGTTGGAAGTGGAGGCTGACGAATCT
GAAGATTTTGGAGGTGATCTGAATGACCTCTACGACGATGAGCTTATCTA
TAAGGAGTCCGAGGCAATACCCAAACTGTATAGCAATACAACAACGACAG
TACGCCAAAACGGTACCAGATCACTAGGGTTAGGATTCAGCGTTAATTCT
GCGAACAATCAGAGCATCACAAACAGTTCGCTGGTCGTCGAAGGCGATAG
GAGTGACGTCAATCCTGTCATGACGCACAGTGCCGACTTAAGTCTAGAGG
AGGACCAAGAACGTCTTTATTTTTATCTTCTTGCTCTGGTTTCACTCGGA
GTGCTTATTTCCATTGTCATATTCGGCACTAGGATAGCGCTTCAAAAACA
CCATCTGGTAACAGAAACGCTCTCCAGCTCTTTTGCAAAAACGACGAGAC
GGGTTGAGGAAACAACTATTCCAAGCGGCTTAAATGACACAATTTCCGAA
ATAGACGCTGAAATCGACCTAAAAACAACACTTCCTTTACCCAACTTGTC
CAATAAAGAGAATTACTTGACCTACGCACCAACCAGCAGTCTGTACGCCG
ATCTCCCCCGTAATCAACTGGTCTCAGCTTGTAGCCAAGGATCTGCCGCC
GGGCAAATAGGAAAGCCGCACATCGTTGGCACTCGTCAATCACCCGACCT
TATTGGCATAACACAGGGACCTTTTGTGACTACAAGTATGGCGAGTTTAG
GCGGTCAGGGTCCGATGGCTGCGATGGTGACGTCGGCTATTGTTATTGGA
GATTCTACGCCCAATAGTAGTTCCTTAGGCGCTATGATACCTATCACCCA
GTACACAACTGCTCCAACAATCAGAGGCGGGTACGTCATAAGTGCTGATA
ACATGGGTGTAATTCAGCGGGCGAATAACACGCCCACCCCGTTAAACTTG
CTGTCCGGGAGCACGCCAGAACAACCCCCGCAAGCCGGACCGATAATCTC
GGCGGCGGGCATGACTGTAACTCCACAGGCCCATGGGGGCGCATCAAATC
TGCGGCGTGTAAAGCCACCATTCTTGCAGCCACAGCTTTCATATGATGGC
ACTGCACCACGGACTCTCTCCACCGGAGTAGCTGTTGGCTCGCAGTTTTA
TTATGGATGAAAGCTTTCTAGACCAT
BS33155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42402-RE | 2244 | CG42402-PE | 1..2244 | 17..2260 | 11205 | 100 | Plus |
| CG42402-RC | 2214 | CG42402-PC | 100..2214 | 146..2260 | 10560 | 100 | Plus |
| CG42402-RD | 2214 | CG42402-PD | 100..2214 | 146..2260 | 10560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42402-RE | 4654 | CG42402-RE | 916..3159 | 17..2260 | 11205 | 100 | Plus |
| CG42402-RC | 4016 | CG42402-RC | 407..2521 | 146..2260 | 10560 | 100 | Plus |
| CG42402-RD | 4915 | CG42402-RD | 1306..3420 | 146..2260 | 10560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4102498..4102831 | 1927..2260 | 1670 | 100 | Plus |
| 3R | 32079331 | 3R | 4094147..4094456 | 274..583 | 1550 | 100 | Plus |
| 3R | 32079331 | 3R | 4101464..4101770 | 1094..1400 | 1535 | 100 | Plus |
| 3R | 32079331 | 3R | 4102174..4102444 | 1659..1929 | 1355 | 100 | Plus |
| 3R | 32079331 | 3R | 4101860..4102120 | 1400..1660 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 4095772..4095998 | 581..807 | 1090 | 98.7 | Plus |
| 3R | 32079331 | 3R | 4099866..4100015 | 801..950 | 750 | 100 | Plus |
| 3R | 32079331 | 3R | 4101245..4101388 | 951..1094 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 4081690..4081819 | 17..146 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 4093945..4094074 | 146..275 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 4097873..4097986 | 1064..951 | 480 | 94.7 | Minus |
Blast to na_te.dros performed 2014-11-28 15:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 2078..2117 | 2049..2088 | 119 | 77.5 | Plus |
BS33155.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-06 11:10:02 Download gff for
BS33155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42402-RE | 916..3158 | 17..2259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:46 Download gff for
BS33155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42402-RE | 916..3158 | 17..2259 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:46 Download gff for
BS33155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4101465..4101770 | 1095..1400 | 100 | -> | Plus |
| 3R | 4101861..4102120 | 1401..1660 | 100 | -> | Plus |
| 3R | 4094149..4094456 | 276..583 | 100 | -> | Plus |
| 3R | 4081690..4081819 | 17..146 | 100 | -> | Plus |
| 3R | 4093946..4094074 | 147..275 | 100 | -> | Plus |
| 3R | 4095775..4095991 | 584..800 | 99 | -> | Plus |
| 3R | 4099866..4100015 | 801..950 | 100 | -> | Plus |
| 3R | 4101245..4101388 | 951..1094 | 100 | -> | Plus |
| 3R | 4102176..4102443 | 1661..1928 | 100 | -> | Plus |
| 3R | 4102500..4102830 | 1929..2259 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-06 11:10:02 Download gff for
BS33155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 2445627..2445886 | 1401..1660 | 100 | -> | Plus |
| 3RHet | 2378193..2378322 | 17..146 | 100 | -> | Plus |
| 3RHet | 2437712..2437840 | 147..275 | 100 | -> | Plus |
| 3RHet | 2437915..2438222 | 276..583 | 100 | -> | Plus |
| 3RHet | 2439541..2439757 | 584..800 | 99 | -> | Plus |
| 3RHet | 2443632..2443781 | 801..950 | 100 | -> | Plus |
| 3RHet | 2445011..2445154 | 951..1094 | 100 | -> | Plus |
| 3RHet | 2445231..2445536 | 1095..1400 | 100 | -> | Plus |
| 3RHet | 2446266..2446596 | 1929..2259 | 100 | | Plus |
| 3RHet | 2445942..2446209 | 1661..1928 | 100 | -> | Plus |
BS33155.pep Sequence
Translation from 16 to 2259
> BS33155.pep
MESRLAWKRYTSYPQPLRHRVVLIGWALIWTMSLNSVFCGEKLALLSATL
RTYQKAACDSDQVLIACPRGTSISIEFAQYNKFVAKDGYSIEELCPGSGE
IRSEIRGRTKHLLRGSIFGSPPLKTPSSKYMTAGHSLAVPVQSVPEFNSS
SATSSESISSVSPSVDDIQSTDYNTDNASENCMWPNALQYSLLQTVVEAC
QKKKHCKFHGSPEFYGQGSSGVGDSSGTSSYHSSTASSNAISNDPCPKRK
KIVEVAYKCRPYEFRSKVACHNDVAQLECNPYSRIAVYSASFGRTEYESI
QCPQPQGVREETCLASYATETVMQICHGRRRCNLAADANTFGSPCQPNSR
MYLKVVYTCVPKQVLKENKALEVEADESEDFGGDLNDLYDDELIYKESEA
IPKLYSNTTTTVRQNGTRSLGLGFSVNSANNQSITNSSLVVEGDRSDVNP
VMTHSADLSLEEDQERLYFYLLALVSLGVLISIVIFGTRIALQKHHLVTE
TLSSSFAKTTRRVEETTIPSGLNDTISEIDAEIDLKTTLPLPNLSNKENY
LTYAPTSSLYADLPRNQLVSACSQGSAAGQIGKPHIVGTRQSPDLIGITQ
GPFVTTSMASLGGQGPMAAMVTSAIVIGDSTPNSSSLGAMIPITQYTTAP
TIRGGYVISADNMGVIQRANNTPTPLNLLSGSTPEQPPQAGPIISAAGMT
VTPQAHGGASNLRRVKPPFLQPQLSYDGTAPRTLSTGVAVGSQFYYG*
BS33155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42402-PE | 747 | CG42402-PE | 1..747 | 1..747 | 3862 | 100 | Plus |
| CG42402-PC | 737 | CG42402-PC | 27..737 | 37..747 | 3634 | 99.3 | Plus |
| CG42402-PD | 737 | CG42402-PD | 27..737 | 37..747 | 3634 | 99.3 | Plus |
