BS33160.complete Sequence
719 bp assembled on 2014-01-22
GenBank Submission: KX801116
> BS33160.complete
GAAGTTATCAGTCGACATGTTTGACTATTCGGCTGACAAAGCTCGGGAGA
GTGTGAAGCGGAGTCTGGAGCGGCTCCAGTTGGACAGGGTGGACATACTA
CAGGTTCATGACGTGGACGCGGCACCCAATCTAGACATAGTGCTGAATGA
GACCATACCCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCA
TCGGAGTCACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGG
GGCAAGGGTCGCATTCAGGTGGTGCTCAACTATGCTCGTTACACCCTTTT
AGACAACACCTTGCTGCGCTACATGAAGGACTTCCAGAAAATGGGAGTGG
GCGTTGTCTGTGCGGCCGCTCACTCATTGGGACTCTTGAGAAACGCTGGA
CCACATGCATCGCATCCCGGTAGTCAGGAAATCCTGGCCGTGGCCAAACG
GGGGGCCGAAATCTGCCAGCAGAGGAACGTGGAGCTGGGAAAGCTGGCCA
TGTACTATACGATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGCATC
CCCAACCGAAAGCTGCTGCGGATTAACCTGGACGCGATCTTCGACGGTCT
CACTTCCCACGAACAGGAAGTGCTGCAGTATTTGCGCGAAAACGTCTTTA
CCAAGTCCTACAGTTGGGGATCCACTTTATCCACGGCTAAGTTGTTAAAG
TGAAAGCTTTCTAGACCAT
BS33160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12224-RC | 687 | CG12224-PC | 1..687 | 17..703 | 3435 | 100 | Plus |
| CG12224-RB | 687 | CG12224-PB | 1..687 | 17..703 | 3435 | 100 | Plus |
| CG3397-RA | 1029 | CG3397-PA | 343..1029 | 17..703 | 2580 | 91.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12224-RC | 1628 | CG12224-RC | 852..1538 | 17..703 | 3435 | 100 | Plus |
| CG12224-RB | 1109 | CG12224-RB | 333..1019 | 17..703 | 3435 | 100 | Plus |
| CG3397-RA | 1187 | CG3397-RA | 376..1062 | 17..703 | 2580 | 91.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11981012..11981554 | 642..100 | 2715 | 100 | Minus |
| 3R | 32079331 | 3R | 11983486..11984028 | 642..100 | 2070 | 92.1 | Minus |
| 3R | 32079331 | 3R | 11981604..11981692 | 105..17 | 445 | 100 | Minus |
| 3R | 32079331 | 3R | 11984078..11984166 | 105..17 | 340 | 92.1 | Minus |
| 3R | 32079331 | 3R | 11980794..11980854 | 703..643 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 11983223..11983283 | 703..643 | 200 | 88.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:52:56 has no hits.
BS33160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:27:11 Download gff for
BS33160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12224-RB | 339..1018 | 23..702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:33 Download gff for
BS33160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12224-RB | 339..1018 | 23..702 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:33 Download gff for
BS33160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11980795..11980854 | 643..702 | 100 | <- | Minus |
| 3R | 11981012..11981550 | 104..642 | 100 | <- | Minus |
| 3R | 11981606..11981686 | 23..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:27:11 Download gff for
BS33160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7806517..7806576 | 643..702 | 100 | <- | Minus |
| arm_3R | 7806734..7807272 | 104..642 | 100 | <- | Minus |
| arm_3R | 7807328..7807408 | 23..103 | 100 | | Minus |
BS33160.pep Sequence
Translation from 16 to 702
> BS33160.pep
MFDYSADKARESVKRSLERLQLDRVDILQVHDVDAAPNLDIVLNETIPVL
EEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQVVLNYARYTLLDNTLL
RYMKDFQKMGVGVVCAAAHSLGLLRNAGPHASHPGSQEILAVAKRGAEIC
QQRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLRINLDAIFDGLTSHEQ
EVLQYLRENVFTKSYSWGSTLSTAKLLK*
BS33160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12224-PC | 228 | CG12224-PC | 1..228 | 1..228 | 1154 | 100 | Plus |
| CG12224-PB | 228 | CG12224-PB | 1..228 | 1..228 | 1154 | 100 | Plus |
| CG3397-PA | 342 | CG3397-PA | 115..342 | 1..228 | 1055 | 90.8 | Plus |
| CG18547-PA | 345 | CG18547-PA | 113..330 | 1..217 | 656 | 58.7 | Plus |
