Clone BS33166 Report

Search the DGRC for BS33166

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:331
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG44001-RA
Protein status:BS33166.pep: full length peptide match
Sequenced Size:578

Clone Sequence Records

BS33166.complete Sequence

578 bp assembled on 2014-01-22

GenBank Submission: KX802560

> BS33166.complete
GAAGTTATCAGTCGACATGGATCCACATAGTGCGGACAACTGCAAGTGCC
ACAAGCAGACGCAGCCGGCACAGCAGACGTTAAGCGACATGGACTTCGAT
CGAGGCATTTGGAATGCAGCTATCTATAACGAAGTGGAGCGTGTAAGAGA
GTTTATCAAGAAGGGCCAGTCGATGGCTCGCGATGACTGCGACTATACGG
CTCTGCACTATGCGGCCCGCAATGGGAACGAGCCCATCTGCAAGCTGCTT
CTCGACGAGGGCAAGGCAGACGTGAATGCTGTGACCAAAGCAGGAGCCAC
CGCGCTGCATCGTGCAGCCATGATGGGCCACTTGGAAATCGTGAAGCTAC
TGGTCGAGCACAAGGCTAATCTTCTGCTGCAGGACGAGAGCGGACAGACC
GCTTTGCATCGAGCAGTGATGCGGGGCCACCTGGAGGTGTGTCGCATTCT
GCTGGCAAAGGAGCCAACACTTAAGCTGGTCAAGGATAAAAAGGACAAAA
TTGCATTTGAGTACATCATGGAGAACGCCAATGATGATTTTAAGCTGCTG
CTGAAGCCCTAAAAGCTTTCTAGACCAT

BS33166.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG44001-RE 546 CG44001-PE 1..546 17..562 2730 100 Plus
CG44001-RD 546 CG44001-PD 1..546 17..562 2730 100 Plus
CG44001-RC 546 CG44001-PC 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG44001-RE 2431 CG44001-RE 1299..1845 17..563 2735 100 Plus
CG44001-RD 2415 CG44001-RD 1283..1829 17..563 2735 100 Plus
CG44001-RC 2281 CG44001-RC 1149..1695 17..563 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5047542..5047779 326..563 1190 100 Plus
2L 23513712 2L 5047271..5047480 118..327 1050 100 Plus
2L 23513712 2L 5047104..5047206 17..119 515 100 Plus
Blast to na_te.dros performed 2014-11-28 14:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 1447..1530 523..445 110 64.3 Minus

BS33166.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:27:28 Download gff for BS33166.complete
Subject Subject Range Query Range Percent Splice Strand
CG44001-RC 1149..1692 17..560 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:56 Download gff for BS33166.complete
Subject Subject Range Query Range Percent Splice Strand
CG44001-RC 1149..1692 17..560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:56 Download gff for BS33166.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5047543..5047776 327..560 100   Plus
2L 5047104..5047206 17..119 100 -> Plus
2L 5047273..5047479 120..326 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:27:28 Download gff for BS33166.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5047543..5047776 327..560 100   Plus
arm_2L 5047104..5047206 17..119 100 -> Plus
arm_2L 5047273..5047479 120..326 100 -> Plus

BS33166.pep Sequence

Translation from 16 to 561

> BS33166.pep
MDPHSADNCKCHKQTQPAQQTLSDMDFDRGIWNAAIYNEVERVREFIKKG
QSMARDDCDYTALHYAARNGNEPICKLLLDEGKADVNAVTKAGATALHRA
AMMGHLEIVKLLVEHKANLLLQDESGQTALHRAVMRGHLEVCRILLAKEP
TLKLVKDKKDKIAFEYIMENANDDFKLLLKP*

BS33166.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG44001-PE 181 CG44001-PE 1..181 1..181 946 100 Plus
CG44001-PD 181 CG44001-PD 1..181 1..181 946 100 Plus
CG44001-PC 181 CG44001-PC 1..181 1..181 946 100 Plus
CG44001-PB 181 CG44001-PB 1..181 1..181 946 100 Plus
CG44001-PA 181 CG44001-PA 1..181 1..181 946 100 Plus