BS33171.complete Sequence
1211 bp assembled on 2014-01-22
GenBank Submission: KX800887
> BS33171.complete
GAAGTTATCAGTCGACATGTTAAACAGCGCTAATAACAATTCTCCCCAGC
ACCCGGTGAGTGCACCATCCGATATCAACATGAATGGCTATAACCGAAAA
TTGCCACAAAAACGTGGCTATGAGATGCCAAAATACTCTGATCCAAAAAA
GAAAATGTGCAAGGAGCGCATTCCCCAGCCGAAGAACACGGTGGCCATGC
TGAATGAGCTAAGACATGGACTGATTTACAAATTGGAGTCACAGACTGGT
CCGGTACACGCACCTCTATTCACGATATCCGTGGAGGTCGATGGACAGAA
ATACTTGGGCCAGGGCCGTAGTAAAAAAGTTGCACGCATCGAAGCAGCAG
CAACTGCACTGCGCAGCTTTATACAGTTTAAGGATGGAGCAGTTCTGTCG
CCTCTGAAGCCGGCGGGCAACTTGGACTTTACCAGCGATGAACATCTTGA
AAATGGTATTGAAAATTTGTCCAGTTCAAAAATGTTTGAGATCATTCAGA
CGATGTTGACTGAAAAGCTATCCAACCCTACCTCGCTTGAACAACCCACG
TTTTGCATGAGTCAGAATGTCAGCAAAAGTGCTATTACTGTTGACGGTCA
GAAGAAGGTTCCAGATAAGGGTCCTGTCATGCTCCTCTACGAATTATTTA
ATGACGTTAATTTCGAATGCATTAATATTGACGGCGCCCAGAACAATTGT
CGCTTCAAAATGACCGTCACAATCAACGAAAAGAAGTTCGATGGAACAGG
TCCTTCCAAAAAGACGGCGAAAAATGCGGCAGCTAAGGCGGCACTTGCTT
CGTTATGCAATATTTCCTACAGTCCAATGGTGGTGCCACAGAAGAACGTA
CCCCTGCCAATCGACGACAAGTCGTCATCGATGGAGTTGCCTCAGATACA
CGCGGATACGATTGGTCGGTTGGTCTTAGAAAAGTTCATGGAAGTAATCA
AGGGCCAGGAGGCTTACTCGCGTCGAAAGGTATTAGCGGGCATTGTAATG
ACTGAAAACATGAATTTTTGTGAAGCCAAAGTTATTTCAGTTTCGACGGG
CACCAAGTGTGTCAGCGGTGAGCATATGAGTGTGAACGGAGCTGTCCTAA
ATGATTCCCATGCTGAAATAGTCTCCAGGCGTTGTCTTCTCAAATATTTA
TATGCACAGCTGGACCTTCAGTGCAATCAGGGTATAGTTGTTTGAAAGCT
TTCTAGACCAT
BS33171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adar-RD | 1179 | CG12598-PD | 1..1179 | 17..1195 | 5895 | 100 | Plus |
| Adar-RK | 1179 | CG12598-PK | 1..1179 | 17..1195 | 5895 | 100 | Plus |
| Adar-RN | 2010 | CG12598-PN | 1..1165 | 17..1181 | 5825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adar-RD | 2042 | CG12598-RD | 502..1681 | 16..1195 | 5900 | 100 | Plus |
| Adar-RK | 2073 | CG12598-RK | 551..1730 | 16..1195 | 5900 | 100 | Plus |
| Adar-RN | 6823 | CG12598-RN | 502..1667 | 16..1181 | 5830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1780329..1780613 | 748..1032 | 1425 | 100 | Plus |
| X | 23542271 | X | 1779088..1779369 | 285..566 | 1410 | 100 | Plus |
| X | 23542271 | X | 1780062..1780246 | 567..751 | 925 | 100 | Plus |
| X | 23542271 | X | 1780675..1780839 | 1031..1195 | 825 | 100 | Plus |
| X | 23542271 | X | 1778814..1778962 | 140..288 | 745 | 100 | Plus |
| X | 23542271 | X | 1778612..1778699 | 53..140 | 440 | 100 | Plus |
| X | 23542271 | X | 1775702..1775738 | 16..52 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:53:24 has no hits.
BS33171.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:27:23 Download gff for
BS33171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RK | 557..1729 | 22..1194 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:25:49 Download gff for
BS33171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RK | 557..1729 | 22..1194 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:25:49 Download gff for
BS33171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1775708..1775738 | 22..52 | 100 | -> | Plus |
| X | 1778612..1778699 | 53..140 | 100 | -> | Plus |
| X | 1778815..1778960 | 141..286 | 100 | -> | Plus |
| X | 1779090..1779369 | 287..566 | 100 | -> | Plus |
| X | 1780062..1780244 | 567..749 | 100 | -> | Plus |
| X | 1780331..1780611 | 750..1030 | 100 | -> | Plus |
| X | 1780675..1780838 | 1031..1194 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:27:23 Download gff for
BS33171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1672848..1672993 | 141..286 | 100 | -> | Plus |
| arm_X | 1673123..1673402 | 287..566 | 100 | -> | Plus |
| arm_X | 1674095..1674277 | 567..749 | 100 | -> | Plus |
| arm_X | 1669741..1669771 | 22..52 | 100 | -> | Plus |
| arm_X | 1672645..1672732 | 53..140 | 100 | -> | Plus |
| arm_X | 1674364..1674644 | 750..1030 | 100 | -> | Plus |
| arm_X | 1674708..1674871 | 1031..1194 | 100 | | Plus |
BS33171.pep Sequence
Translation from 16 to 1194
> BS33171.pep
MLNSANNNSPQHPVSAPSDINMNGYNRKLPQKRGYEMPKYSDPKKKMCKE
RIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQG
RSKKVARIEAAATALRSFIQFKDGAVLSPLKPAGNLDFTSDEHLENGIEN
LSSSKMFEIIQTMLTEKLSNPTSLEQPTFCMSQNVSKSAITVDGQKKVPD
KGPVMLLYELFNDVNFECINIDGAQNNCRFKMTVTINEKKFDGTGPSKKT
AKNAAAKAALASLCNISYSPMVVPQKNVPLPIDDKSSSMELPQIHADTIG
RLVLEKFMEVIKGQEAYSRRKVLAGIVMTENMNFCEAKVISVSTGTKCVS
GEHMSVNGAVLNDSHAEIVSRRCLLKYLYAQLDLQCNQGIVV*
BS33171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adar-PD | 392 | CG12598-PD | 1..392 | 1..392 | 2016 | 100 | Plus |
| Adar-PK | 392 | CG12598-PK | 1..392 | 1..392 | 2016 | 100 | Plus |
| Adar-PN | 669 | CG12598-PN | 1..388 | 1..388 | 1998 | 100 | Plus |
| Adar-PJ | 389 | CG12598-PJ | 8..389 | 11..392 | 1961 | 99.7 | Plus |
| Adar-PH | 665 | CG12598-PH | 9..384 | 13..388 | 1933 | 100 | Plus |
