BS33175.complete Sequence
2216 bp assembled on 2014-03-06
GenBank Submission: KX803384
> BS33175.complete
GAAGTTATCAGTCGACATGATCGAGGCCTTTGCGAATCATTTCAGCAGCC
ATCTGGGACGCCACCTCTTCTACTGGGCCATCGAATCGAGCAGCGCCACC
TCGGGTAACTACGGCCTCAACCTGCGGCTCTCCGAGCTGATCAACAAGTT
CCACGGCCCCCTCGAGCGGGGAGTGCAAGTGCTGGACCACCTGCTCACCC
TCGAGGAGGACGATTTCGCCGGCCACTGGGGCAGCGCCTACGCGCACAAC
TATGAGCCGGAGTACGCCGCTCGGGTGCCGGAGAACGAGGAGCTGCCGCC
TCCAGAACACATGGAAACCCTGAACAATGGCAACGGGCTGCTCCACTCGC
CGCCCCACAATCACCAGCAGCAGCAGCAGCAACAACAGCGAGGCGGAGGA
GGAGCATCGCCAGCTGGAGGCGGAGGAGGTCCCTCTGCCGCAGCGGATCA
CAATATCCAGATAACGCAGCCTATCAGTGCTCCATCCTCGCCGTTGGCTT
CACCGGGCGCCCTCAACAGCAGTGGCAGCAGCAGTGGTGGTGGTGCAGGA
AGTGCCGGAGGAATCTCCGGCAGTCCCACCGCCTTTTGTCTGCCCTCCAG
TTCCGCAGCGGCAGCGGTGGCTGCCATTTCCGCTACGCCCACCAGTGGGA
GTGGATCGTATGTGTGCTCTGCCGGAACCAATTGGCATTTCGCAGCTGTG
GCAGCATCCAACGCCATCGATACGGCTGATCCCAACTGGCAGGCCAGCAA
GGCGACGGTCCTCGAGAGGAATGCAGCCATGTTCAACAACGAACTCATGT
CCGATGTCAAGTTCATTGTGGGCGGAGAGTTCGACATCGATCCCATTCAG
ACCATTCCCGCCCACAAATATATTCTCGCCACGGGCAGTTCCGTATTCTA
TGCTATGTTCTATGGAGGACTGGCGGAGAACAAGCAGGAAATCAAAGTGC
CTGACGTGGAACCCACTGCCTTCCTAACGTTGCTAAGGTACCTTTATTGT
GATGAAATCAAACTGGAACCTGAACACATTCTGGCCACGCTCTATGCAGC
CAAGAAGTACATTGTCCCGCACTTAGCCAGAGCATGCGTCAACTATCTGG
AGGTGAAGTTGACGGCAAAAAACGCCTGCCTACTTCTCAGTCAATCGCGT
CTGTTCGAGGAGCCCGAGCTGATGCAACGTTGCTGGGAAGTGATCGACGC
CCAGGCCGAGATGGCGGTTAAGTCCGAGGACTTTGTGGATATTGATCTCA
AGACCTTTGAGTCAATTCTTTCGCGAGAGACACTCAACTGCAAGGAGATA
CACTTGTTCGAGGCGGCCCTTAACTGGGCAATGAACGCCTGCGAGAAGAT
GAGCATCGATGACACGCCGCAGAACAAGCGCCGGCTGCTGGGACAAGCGC
TGCACCTCATCCGCATTCCCACAATGTCGCTGGAGGAGTTCGCTAACGGC
GTGGCCCAGACAGGCATTCTTTCGTCGCAGGAGACGATCGACATGTTCCT
GCACTTCACTGCCAAGATGAAGCCCTCCCTGGGCTTTCCCACACGCTCCA
GGGCGGGATTAAAGACCCAGGTCTGCCATCGCTTCCAGTCGTGCGCCTAT
CGCTCGAACCAGTGGCGCTACCGCGGGCGCTGTGATTCAATTCAGTTTTC
TGTTGATCGAAGAATTTTCATTGTGGGTTTTGGACTGTACGGCTCGTCGA
CTGGTGCTGCCAACTACAACGTAAAGATCGAACTTAAACGCCTGGGCCGC
ACGCTTGCAGAGAACGACACCAAGTTCTTCTCGGACGGATCAAGCAACAC
GTTCCACGTCTTCTTCGAGAATCCCATCCAGATCGAGCCCGAGTGTTATT
ATACCGCCTCCGTAATTCTCGATGGAAACGAGCTTAGCTTCTTTGGCCAG
GAGGGCATGTCCGAGGTGCTAATGGGCAATGTGACATTCCAGTTCCAGTG
CTCGTCGGAGAGCACCAACGGCACCGGAGTTCAGGGCGGCCAAATCCCAG
AGTTAATCTTCTACGGACCCACCACAGTGACAGCAATGAGCTCGCCCACC
AATTCACTGTGTCCCACGCCAATTGGTGGCAGTTCCTCCAATGCAGGAGC
GACTTCAACCGCAGCAGCCGGAACAGCTGTTCCGAATAGCAGCAATGGAT
CTGGCAATAACGCCAACAGTTCTGGGGAGGATGGCGACGGAAGCACCTGA
AAGCTTTCTAGACCAT
BS33175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lute-RC | 2184 | CG43226-PC | 1..2184 | 17..2200 | 10920 | 100 | Plus |
| lute-RB | 2184 | CG43226-PB | 1..2184 | 17..2200 | 10920 | 100 | Plus |
| lute-RA | 2034 | CG43226-PA | 146..2034 | 312..2200 | 9445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lute-RC | 3707 | CG43226-RC | 239..2422 | 17..2200 | 10920 | 100 | Plus |
| lute-RB | 3623 | CG43226-RB | 155..2338 | 17..2200 | 10920 | 100 | Plus |
| lute-RA | 3537 | CG5319-RA | 364..2252 | 312..2200 | 9445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17387704..17388384 | 982..1662 | 3390 | 99.9 | Plus |
| 3R | 32079331 | 3R | 17388441..17388980 | 1661..2200 | 2700 | 100 | Plus |
| 3R | 32079331 | 3R | 17386902..17387423 | 312..833 | 2610 | 100 | Plus |
| 3R | 32079331 | 3R | 17384652..17384946 | 17..311 | 1475 | 100 | Plus |
| 3R | 32079331 | 3R | 17387488..17387645 | 833..990 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:07:41 has no hits.
BS33175.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-06 11:10:10 Download gff for
BS33175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lute-RB | 155..2337 | 17..2199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:55 Download gff for
BS33175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lute-RB | 155..2337 | 17..2199 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:55 Download gff for
BS33175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17384652..17384946 | 17..311 | 100 | -> | Plus |
| 3R | 17386902..17387423 | 312..833 | 100 | -> | Plus |
| 3R | 17387489..17387642 | 834..987 | 100 | -> | Plus |
| 3R | 17387710..17388384 | 988..1662 | 100 | -> | Plus |
| 3R | 17388443..17388979 | 1663..2199 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-06 11:10:10 Download gff for
BS33175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13210374..13210668 | 17..311 | 100 | -> | Plus |
| arm_3R | 13212624..13213145 | 312..833 | 100 | -> | Plus |
| arm_3R | 13213211..13213364 | 834..987 | 100 | -> | Plus |
| arm_3R | 13213432..13214106 | 988..1662 | 100 | -> | Plus |
| arm_3R | 13214165..13214701 | 1663..2199 | 100 | | Plus |
BS33175.pep Sequence
Translation from 16 to 2199
> BS33175.pep
MIEAFANHFSSHLGRHLFYWAIESSSATSGNYGLNLRLSELINKFHGPLE
RGVQVLDHLLTLEEDDFAGHWGSAYAHNYEPEYAARVPENEELPPPEHME
TLNNGNGLLHSPPHNHQQQQQQQQRGGGGASPAGGGGGPSAAADHNIQIT
QPISAPSSPLASPGALNSSGSSSGGGAGSAGGISGSPTAFCLPSSSAAAA
VAAISATPTSGSGSYVCSAGTNWHFAAVAASNAIDTADPNWQASKATVLE
RNAAMFNNELMSDVKFIVGGEFDIDPIQTIPAHKYILATGSSVFYAMFYG
GLAENKQEIKVPDVEPTAFLTLLRYLYCDEIKLEPEHILATLYAAKKYIV
PHLARACVNYLEVKLTAKNACLLLSQSRLFEEPELMQRCWEVIDAQAEMA
VKSEDFVDIDLKTFESILSRETLNCKEIHLFEAALNWAMNACEKMSIDDT
PQNKRRLLGQALHLIRIPTMSLEEFANGVAQTGILSSQETIDMFLHFTAK
MKPSLGFPTRSRAGLKTQVCHRFQSCAYRSNQWRYRGRCDSIQFSVDRRI
FIVGFGLYGSSTGAANYNVKIELKRLGRTLAENDTKFFSDGSSNTFHVFF
ENPIQIEPECYYTASVILDGNELSFFGQEGMSEVLMGNVTFQFQCSSEST
NGTGVQGGQIPELIFYGPTTVTAMSSPTNSLCPTPIGGSSSNAGATSTAA
AGTAVPNSSNGSGNNANSSGEDGDGST*
BS33175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lute-PC | 727 | CG43226-PC | 1..727 | 1..727 | 3802 | 100 | Plus |
| lute-PB | 727 | CG43226-PB | 1..727 | 1..727 | 3802 | 100 | Plus |
| lute-PA | 677 | CG5319-PA | 48..677 | 98..727 | 3265 | 99.7 | Plus |
| lute-PD | 735 | CG43226-PD | 48..677 | 98..727 | 3265 | 99.7 | Plus |
| CG17068-PA | 694 | CG17068-PA | 2..222 | 238..462 | 324 | 33.8 | Plus |
