BS33176.complete Sequence
785 bp assembled on 2014-01-22
GenBank Submission: KX801661
> BS33176.complete
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGTACAGCCTTTGAGCGACTGCGCCTATAGTAGTCTTTTAGC
GGGGTTTCACAAACTCCGCATAGACCGAATGCGTAGCAATGCATTAGGTA
AGAGTCAAGGTCCAGAATGTGCGATAAAAACGCGGATTTCTTTTCTTAAC
TTGGTTGCAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGAGGATT
TGGAGGTGCAGTTCGATGAAAGCTTTCTAGACCAT
BS33176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8079-RD | 753 | CG8079-PD | 1..753 | 17..769 | 3765 | 100 | Plus |
| CG8079-RE | 690 | CG8079-PE | 1..632 | 17..648 | 3160 | 100 | Plus |
| CG8079-RC | 1506 | CG8079-PC | 1..631 | 17..647 | 3155 | 100 | Plus |
| CG8079-RE | 690 | CG8079-PE | 630..690 | 709..769 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8079-RD | 2159 | CG8079-RD | 86..838 | 17..769 | 3765 | 100 | Plus |
| CG8079-RE | 2096 | CG8079-RE | 86..717 | 17..648 | 3160 | 100 | Plus |
| CG8079-RC | 2838 | CG8079-RC | 86..716 | 17..647 | 3155 | 100 | Plus |
| CG8079-RE | 2096 | CG8079-RE | 715..775 | 709..769 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15221896..15222102 | 563..769 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 15218464..15218657 | 17..210 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 15221429..15221566 | 333..470 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 15218713..15218836 | 209..332 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 15221727..15221823 | 469..565 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:53:50 has no hits.
BS33176.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:27:34 Download gff for
BS33176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RD | 86..837 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:26:02 Download gff for
BS33176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8079-RD | 86..837 | 17..768 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:26:02 Download gff for
BS33176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15221899..15222101 | 566..768 | 100 | | Plus |
| 2R | 15221429..15221565 | 333..469 | 100 | -> | Plus |
| 2R | 15221728..15221823 | 470..565 | 100 | -> | Plus |
| 2R | 15218464..15218655 | 17..208 | 100 | -> | Plus |
| 2R | 15218713..15218836 | 209..332 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:27:34 Download gff for
BS33176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11105969..11106160 | 17..208 | 100 | -> | Plus |
| arm_2R | 11106218..11106341 | 209..332 | 100 | -> | Plus |
| arm_2R | 11108934..11109070 | 333..469 | 100 | -> | Plus |
| arm_2R | 11109233..11109328 | 470..565 | 100 | -> | Plus |
| arm_2R | 11109404..11109606 | 566..768 | 100 | | Plus |
BS33176.pep Sequence
Translation from 16 to 768
> BS33176.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQPLSDCAYSSLLAGFHKL
RIDRMRSNALGKSQGPECAIKTRISFLNLVAGERCGQTGIGGRGFGGAVR
*
BS33176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8079-PD | 250 | CG8079-PD | 1..250 | 1..250 | 1323 | 100 | Plus |
| CG8079-PE | 229 | CG8079-PE | 1..229 | 1..250 | 1185 | 91.6 | Plus |
| CG8079-PC | 501 | CG8079-PC | 1..210 | 1..210 | 1112 | 100 | Plus |
| CG8079-PA | 601 | CG8079-PA | 1..183 | 1..183 | 974 | 100 | Plus |
| CG8079-PB | 599 | CG8079-PB | 1..181 | 1..181 | 965 | 100 | Plus |
