BS33180.complete Sequence
815 bp assembled on 2014-01-22
GenBank Submission: KX804047
> BS33180.complete
GAAGTTATCAGTCGACATGGCTGATGATGAGAAAAAGGCAGCAGCTCCGG
CCGCAGCTCCAGCGGCGGCGGCCAAACCGGCGGCTCCGGCAGCAGCCCCG
GCGGCCAATGGCAAGGCTGCTCCGGCGGCCAATGGAAAGGCTGCTCCGGC
AGCTGCCGCCGCTCCCGCCGGTCCGCCCAAGGATCCCAACGACCCCAAAG
TGAAGGCCGAGGAGGCTAAGAAGGCTAAACAGGCTGAGATCGAGCGCAAG
CGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCCTCCAAGGCCAAGAAGGC
CAAGAAGGGTTTCATGACCCCAGAGAGGAAGAAGAAACTCAGGTTGCTGC
TGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAGAACAGGAACGCAAAGCG
GCTGAACGTAGACGCATCATCGAAGAACGTTGCGGCAGTCCCAGGAATCT
CAGCGATGCCAGCGAAGGCGAATTGCAAGAGATTTGCGAAGAGTATTACG
AGCGTATGTATATTTGTGAAGGCCAGAAATGGGATCTGGAATACGAAGTC
AGGAAAAAAGACTGGGAGATCAACGATCTCAATGCCCAAGTTAACGATCT
TCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAA
ACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTGAGTTCAACTTCCGCAAC
CAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACGCTGGAGGAGGAGGAGAA
GGAGAAAAAGATAAAAGATGCCGCTGTGCTAAATAAGGCCAAAAAGTAAA
AGCTTTCTAGACCAT
BS33180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-RH | 783 | CG7178-PH | 1..783 | 17..799 | 3915 | 100 | Plus |
| wupA-RG | 810 | CG7178-PG | 1..740 | 17..756 | 3700 | 100 | Plus |
| wupA-RF | 627 | CG7178-PF | 13..557 | 212..756 | 2725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-RH | 1212 | CG7178-RH | 141..923 | 17..799 | 3915 | 100 | Plus |
| wupA-RG | 1343 | CG7178-RG | 141..880 | 17..756 | 3700 | 100 | Plus |
| wupA-RF | 1129 | CG7178-RF | 122..666 | 212..756 | 2725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18113739..18113924 | 215..30 | 930 | 100 | Minus |
| X | 23542271 | X | 18106681..18106822 | 754..613 | 710 | 100 | Minus |
| X | 23542271 | X | 18113447..18113577 | 343..213 | 655 | 100 | Minus |
| X | 23542271 | X | 18113257..18113382 | 468..343 | 630 | 100 | Minus |
| X | 23542271 | X | 18109470..18109572 | 568..466 | 515 | 100 | Minus |
| X | 23542271 | X | 18106888..18106933 | 612..567 | 230 | 100 | Minus |
| X | 23542271 | X | 18106506..18106550 | 797..753 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:53:53 has no hits.
BS33180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:27:36 Download gff for
BS33180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RH | 141..914 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:26:03 Download gff for
BS33180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wupA-RH | 141..914 | 17..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:26:03 Download gff for
BS33180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18106513..18106548 | 755..790 | 100 | <- | Minus |
| X | 18106681..18106822 | 613..754 | 100 | <- | Minus |
| X | 18106888..18106931 | 569..612 | 100 | <- | Minus |
| X | 18109470..18109570 | 468..568 | 100 | <- | Minus |
| X | 18113258..18113381 | 344..467 | 100 | <- | Minus |
| X | 18113447..18113575 | 215..343 | 100 | <- | Minus |
| X | 18113740..18113922 | 32..214 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:27:36 Download gff for
BS33180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18000546..18000581 | 755..790 | 100 | <- | Minus |
| arm_X | 18000714..18000855 | 613..754 | 100 | <- | Minus |
| arm_X | 18000921..18000964 | 569..612 | 100 | <- | Minus |
| arm_X | 18003503..18003603 | 468..568 | 100 | <- | Minus |
| arm_X | 18007291..18007414 | 344..467 | 100 | <- | Minus |
| arm_X | 18007480..18007608 | 215..343 | 100 | <- | Minus |
| arm_X | 18007773..18007955 | 32..214 | 100 | <- | Minus |
BS33180.pep Sequence
Translation from 16 to 798
> BS33180.pep
MADDEKKAAAPAAAPAAAAKPAAPAAAPAANGKAAPAANGKAAPAAAAAP
AGPPKDPNDPKVKAEEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFM
TPERKKKLRLLLRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASE
GELQEICEEYYERMYICEGQKWDLEYEVRKKDWEINDLNAQVNDLRGKFV
KPALKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKIK
DAAVLNKAKK*
BS33180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wupA-PH | 260 | CG7178-PH | 1..260 | 1..260 | 1312 | 100 | Plus |
| wupA-PG | 269 | CG7178-PG | 1..248 | 1..248 | 1256 | 100 | Plus |
| wupA-PF | 208 | CG7178-PF | 4..187 | 65..248 | 931 | 99.5 | Plus |
| wupA-PC | 208 | CG7178-PC | 4..187 | 65..248 | 931 | 99.5 | Plus |
| wupA-PI | 199 | CG7178-PI | 4..199 | 65..260 | 876 | 90.3 | Plus |
