Clone BS33182 Report

Search the DGRC for BS33182

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:331
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptNtR-RA
Protein status:BS33182.pep: gold
Sequenced Size:1790

Clone Sequence Records

BS33182.complete Sequence

1790 bp assembled on 2014-07-07

GenBank Submission: KX806194

> BS33182.complete
GAAGTTATCAGTCGACATGTACAACCTTATCAAGGGCTCCTTGGCAACAT
ACTGCTGCCTGTGCCTGCTACTGATATTGATTGACCCAGCGGAATCGGGA
CAACTGTCAACGAGATTCAACGTGAGCTTCGCCCAGCTGGATTCCTGCGA
AACCTACTCCGTTCCGAATACGGGCTATGGCTACCGGAGGTTCTACATGC
TGCGCGAGCTGAGCAACAACAACAGGAAGGCCGGAGAGCGGCTGCACTTG
AAATTCTACGTCCTGACCGCCATGGATGCGCACATCCTGCTCTCGGTGAC
GAATCACCCGCGCCCAAATGATCGCGTTTACGAGATCGTGATAGGAGCCG
GCGGAAATACGTTTTCCGCAATCCGGAATGCTATGGGAATGAGGCGGGTG
GCCACGAATCAAGAGCCGAACTTGGTATCGCTGTACGACCCGACGCCAAT
TGAGATTGTCCAAAACCAGAATGGCGAGCTGTTTGTTTACATACCCGGCT
TCAAGAAGGAGCCCCTGCTGCAGTTCATCGATGAAGCACCGCTGGTCATC
AACTATCTGAGTTTCAGCTCCTTTGGTTCCAATACGGCGCGGTGGTTTTA
CGACTGTGGCTTCGATGGTTATGGGTCGGAAATTGCACCGATAGTGAAGG
AGGAAACGAAGACGGAAAAACTGCTAAGCCATCTGAATATCCAGGCGGAA
AATGCAAGCATGCCGGCTAATCTCAGCTCCATATCGTTCCACTTCCAAAC
GCGCTCCCTCGCCTACGAGCAAACCAGTTCCTTGCTTCAGACCCGCATGC
ACATGATGATGCACTGGAGGGATAGTCGTCTTGTCTGGAAACCCGAGGAC
TTCGGCTCGCTGGAATCTTTCGAACATCCTGACCTTCGTATATGGAAGCC
GCATATGAACGTCCTCAACGGCGCCCTGCAATCCATGGGTCAGGTCCTCC
AATCCTATGAGCTGATGGTCTACGCCAACGGAAGCATCACCCTGTACGCT
CAAAACCTCCAGCTGGCCAGTTGGTGTGTGGACAGTGCCCGAAACTGGCC
AAGCGAGCGAGTGACTTGCGACATCGAGCTGGGTCTCAATGGCCAGGAGG
GGCAGGAGAATGTGGCGCTAATCTACGATGATCAGCGCAAGCCGATTGCG
CCCAATGAGCACGTGAACACGCCATCCGGCTGGTCGTTCACGCAAATGTC
CGTGGTGCTGGTGGAGAACGATTCGCAAAGGCGATACAACCCCAAGGGAA
TGATGCAGAAAATGACCGGCGATGTGGCAATTGAGTTCACGCTGCAAAGG
AATCGGAGCTTCTACATGACCGTCTTCTATTTGCCGTTGATTGCCTGCCA
GATGTTCCTGATTTTGTCCTTTGTACTGCGTTCTACTCGTAGGAGTTCCC
TCATTCTCATCGCCTTGCTGATTGCCGCCTGGGGTTTAATGTACATGACG
CGCTACGCCTCTCCGCATTATGTGCCGCCCATGATGACTGCATATAAAGT
CATCATGATGACCACCACCTATTGCTACATTCTGCACATCTGCATTATAT
GGCTGGATCTATATCCACCCAGATCGAAGGCTCCTGGCTGGCTGGTTAGG
GTGATTAACTCCAATGTTCTGCGATGCATTCTGGGATTGAGATTTTCGGA
TTCTACCGACTATTGCGACATTCAGGAGAATCCCTGGCACCATATGGCCA
AGATCCTGAACAACCTGAGTTCAATCTTGGTCATTATAACCTTTGCCATC
GTAGATATTACGAGTGGGTTTTGAAAGCTTTCTAGACCAT

BS33182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
NtR-RA 1758 CG6698-PA 1..1758 17..1774 8790 100 Plus
NtR-RB 1737 CG6698-PB 1..1737 17..1774 8440 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
NtR-RA 1876 CG6698-RA 48..1807 17..1776 8800 100 Plus
NtR-RB 1855 CG6698-RB 48..1786 17..1776 8450 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22128953..22129485 811..1343 2665 100 Plus
2R 25286936 2R 22127855..22128176 17..338 1610 100 Plus
2R 25286936 2R 22128693..22128881 623..811 945 100 Plus
2R 25286936 2R 22129764..22129930 1485..1651 835 100 Plus
2R 25286936 2R 22128473..22128626 471..624 770 100 Plus
2R 25286936 2R 22129550..22129691 1343..1484 710 100 Plus
2R 25286936 2R 22128281..22128413 338..470 665 100 Plus
2R 25286936 2R 22129991..22130115 1652..1776 625 100 Plus
Blast to na_te.dros performed on 2014-11-28 15:11:09 has no hits.

BS33182.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:54 Download gff for BS33182.complete
Subject Subject Range Query Range Percent Splice Strand
NtR-RA 48..1804 17..1773 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:07 Download gff for BS33182.complete
Subject Subject Range Query Range Percent Splice Strand
NtR-RA 48..1804 17..1773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:07 Download gff for BS33182.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22128282..22128413 339..470 100 -> Plus
2R 22128473..22128625 471..623 100 -> Plus
2R 22128694..22128881 624..811 100 -> Plus
2R 22127855..22128176 17..338 100 -> Plus
2R 22128954..22129485 812..1343 100 -> Plus
2R 22129551..22129691 1344..1484 100 -> Plus
2R 22129764..22129930 1485..1651 100 -> Plus
2R 22129991..22130112 1652..1773 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:54 Download gff for BS33182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18015787..18015918 339..470 100 -> Plus
arm_2R 18015978..18016130 471..623 100 -> Plus
arm_2R 18016199..18016386 624..811 100 -> Plus
arm_2R 18015360..18015681 17..338 100 -> Plus
arm_2R 18016459..18016990 812..1343 100 -> Plus
arm_2R 18017056..18017196 1344..1484 100 -> Plus
arm_2R 18017269..18017435 1485..1651 100 -> Plus
arm_2R 18017496..18017617 1652..1773 100   Plus

BS33182.pep Sequence

Translation from 16 to 1773

> BS33182.pep
MYNLIKGSLATYCCLCLLLILIDPAESGQLSTRFNVSFAQLDSCETYSVP
NTGYGYRRFYMLRELSNNNRKAGERLHLKFYVLTAMDAHILLSVTNHPRP
NDRVYEIVIGAGGNTFSAIRNAMGMRRVATNQEPNLVSLYDPTPIEIVQN
QNGELFVYIPGFKKEPLLQFIDEAPLVINYLSFSSFGSNTARWFYDCGFD
GYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLAY
EQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVL
NGALQSMGQVLQSYELMVYANGSITLYAQNLQLASWCVDSARNWPSERVT
CDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPSGWSFTQMSVVLVE
NDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLIL
SFVLRSTRRSSLILIALLIAAWGLMYMTRYASPHYVPPMMTAYKVIMMTT
TYCYILHICIIWLDLYPPRSKAPGWLVRVINSNVLRCILGLRFSDSTDYC
DIQENPWHHMAKILNNLSSILVIITFAIVDITSGF*

BS33182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
NtR-PA 585 CG6698-PA 1..585 1..585 3085 100 Plus
NtR-PB 578 CG6698-PB 1..578 1..585 3033 98.8 Plus