BS33184.complete Sequence
1943 bp assembled on 2014-03-06
GenBank Submission: KX800445
> BS33184.complete
GAAGTTATCAGTCGACATGACCAATGAGTGGATCGATTGGAATGACAGTC
GGATGCTACCGCCGCTGCGGTCGGCAAACTATAACTACCATCCTCAGACC
TTCTTGCCAAATAATTATCAGTGCTTTACTGGAAAATTCCACCTGAAGGG
ACAAAAGTTGCAGCAGCTAACCACCAATCATAGCAAGCTCAAAGAAGTTC
CCACCGCCTTGCCACCCCTCACGCCGGGCACCAATCGCAAGGTCAACGAG
GTACTGAAGGCATCCTTTGCCTCCTGGGAAAAGGAGGTCCAAAAATGCAA
CATAACCAAAGATCCGCGTGAATGGACGGAGGAGCATGTCATCTACTGGC
TCAATTGGGCCAAAAATGAGTTCTCATTGGTCTCCATGAACCTGGACCCC
TTCTACAAGATGAAGGGACGCGCCATGGTGGATCTGGGCAAGGAGAAGTT
CCTGGCCATCACGCCGCCCTTCACCGGCGACATACTGTGGGAGCACTTGG
ACATCCTGCAAAAAGATTGCGAGAAACCAAATGAGGATATTGTGCACGGC
AATTCCTTTGAGTCGGCCACCACGGCCTCGGTCTGTGGATCGGACCACCA
GGTGGCCAATTACCCCAACGAGACGCACGCCAACAGCAACAACAGCAGCA
TAAACAGCCGCCTGTCCATGGATTATGTGACGTCGGCGGGGAATAGTGAT
AATAAAAACTTCCACCGCGCCACGCCTCACTCCCACAATGGCTACAACAC
CAGCAACACACACGACCGCATCAACAACAGCACGCCCCCGCAGCAGCAGC
AATCGCAGCAGCCGACTGTCAATGGCAGCGGTAGCGCCAGCAGCAACAAC
AATAACTCCATGCTACCGCCCGCTGTACAGCAAAGCAACAACGAAAATAA
CAACACCAGCAGCAGCAACACAAACAACAGCAGCAACAACAACAACAACA
GCGGTGGCAGCAACAATTCGAATGCGGGCAGCAATAACAACAATAATAAC
AACAATAATATTAACTTTATGGCAGCGGCGGCGATCTTCCAACATCACCT
CAAAGAGGAGCCGGGCACCCAGAATGGTAATATCGGTGGCTATGGTGGTG
GCAGTAATAGCCAGAACGATCCCACGGATCTCAGTAGTTATGGATTGCCT
GCCCACCTGGCCGCTTACGGTGGTGGGAGTGGCAGTGGGCCAACCGGCGG
CAGGAGCTCCGGTGGCGGTGGCGATGAAAGCGATTATCACAGCACGATCT
CGGCGCAGGATCACCAGAGTCAGCAATCGAGTGGAGGAAATGGCAGTGGA
GGAGCCAGCGGTGGAAGCACCGGAAACAGCAACGGTTACTTGGACAGCAG
CTCGGAGTTCTATGGCAGTTACGCGGGCAGGAATCGATTCCACGATGGTT
ATCCACCGGAATTTACGCCCTACGATGCTCAATCCTTCCAGTCGATGGGC
CCCCAGCCCACGGCCATGGATCAGTGGGGAGCAGCCCATGCCCACCAGCA
TCCGGCAGCGTATATGAGCACCTTGGGTCTGGATAAGGGCCTGCTGGGTG
GCTATACGACGCAGGGCGGAGTGCCGTGCTTCACGGGATCGGGTCCCATT
CAACTGTGGCAATTCCTGCTCGAGTTGCTGCTGGACAAGACGTGTCAGAG
TTTCATTTCGTGGACCGGCGATGGCTGGGAGTTCAAGCTAACAGATCCTG
ATGAGGTGGCTCGTCGTTGGGGAATTCGCAAAAACAAACCGAAGATGAAC
TACGAGAAGCTGAGTCGCGGTCTGCGCTACTATTATGACAAAAACATCAT
CCACAAGACGGCAGGCAAACGATATGTCTACCGCTTTGTCTGTGATCTCC
AGAATCTAGTTGGGCACACACCCGAGGAGCTGGTGGCCAAGTATGATCTT
AAGATTGAGAAAAAAGATGTGGATTAGAAGCTTTCTAGACCAT
BS33184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnt-RD | 1911 | CG17077-PD | 1..1911 | 17..1927 | 9465 | 99.7 | Plus |
| pnt-RB | 2157 | CG17077-PB | 423..2157 | 193..1927 | 8600 | 99.7 | Plus |
| pnt-RE | 1878 | CG17077-PE | 691..1878 | 740..1927 | 5895 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnt-RD | 2805 | CG17077-RD | 474..2388 | 17..1931 | 9470 | 99.6 | Plus |
| pnt-RB | 4074 | CG17077-RB | 1206..2944 | 193..1931 | 8605 | 99.7 | Plus |
| pnt-RE | 3715 | CG17077-RE | 1394..2585 | 740..1931 | 5900 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23291715..23292682 | 1707..740 | 4795 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23311981..23312208 | 741..514 | 1125 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23312887..23313092 | 515..310 | 1015 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23313665..23313842 | 194..17 | 875 | 99.4 | Minus |
| 3R | 32079331 | 3R | 23291495..23291660 | 1864..1699 | 815 | 99.4 | Minus |
| 3R | 32079331 | 3R | 23313442..23313560 | 311..193 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 23291361..23291429 | 1931..1863 | 330 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-28 15:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2543 | 742..969 | 377 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2532 | 805..1049 | 367 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2545 | 775..1016 | 362 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6535..6920 | 627..1015 | 333 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2668 | 613..968 | 323 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6923 | 743..943 | 317 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6912 | 774..965 | 311 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2771..3034 | 729..986 | 303 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2718..2973 | 746..1006 | 300 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2666 | 616..945 | 299 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2543 | 741..921 | 291 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7005 | 733..1010 | 291 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..7112 | 612..964 | 241 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..7028 | 736..952 | 200 | 60.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1045..1178 | 819..950 | 187 | 64 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..56 | 980..1014 | 121 | 82.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7094 | 980..1014 | 121 | 82.9 | Plus |
BS33184.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-06 11:10:08 Download gff for
BS33184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnt-RD | 474..2384 | 17..1927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:54 Download gff for
BS33184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnt-RD | 474..2384 | 17..1927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:54 Download gff for
BS33184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23291365..23291428 | 1864..1927 | 100 | <- | Minus |
| 3R | 23291496..23291653 | 1706..1863 | 100 | <- | Minus |
| 3R | 23291717..23292681 | 741..1705 | 99 | <- | Minus |
| 3R | 23311982..23312206 | 516..740 | 99 | <- | Minus |
| 3R | 23312887..23313090 | 312..515 | 99 | <- | Minus |
| 3R | 23313442..23313558 | 195..311 | 100 | <- | Minus |
| 3R | 23313665..23313842 | 17..194 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-06 11:10:08 Download gff for
BS33184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19117087..19117150 | 1864..1927 | 100 | <- | Minus |
| arm_3R | 19117218..19117375 | 1706..1863 | 100 | <- | Minus |
| arm_3R | 19117439..19118403 | 741..1705 | 99 | <- | Minus |
| arm_3R | 19137704..19137928 | 516..740 | 99 | <- | Minus |
| arm_3R | 19138609..19138812 | 312..515 | 99 | <- | Minus |
| arm_3R | 19139164..19139280 | 195..311 | 100 | <- | Minus |
| arm_3R | 19139387..19139564 | 17..194 | 99 | | Minus |
BS33184.pep Sequence
Translation from 16 to 1926
> BS33184.pep
MTNEWIDWNDSRMLPPLRSANYNYHPQTFLPNNYQCFTGKFHLKGQKLQQ
LTTNHSKLKEVPTALPPLTPGTNRKVNEVLKASFASWEKEVQKCNITKDP
REWTEEHVIYWLNWAKNEFSLVSMNLDPFYKMKGRAMVDLGKEKFLAITP
PFTGDILWEHLDILQKDCEKPNEDIVHGNSFESATTASVCGSDHQVANYP
NETHANSNNSSINSRLSMDYVTSAGNSDNKNFHRATPHSHNGYNTSNTHD
RINNSTPPQQQQSQQPTVNGSGSASSNNNNSMLPPAVQQSNNENNNTSSS
NTNNSSNNNNNSGGSNNSNAGSNNNNNNNNNINFMAAAAIFQHHLKEEPG
TQNGNIGGYGGGSNSQNDPTDLSSYGLPAHLAAYGGGSGSGPTGGRSSGG
GGDESDYHSTISAQDHQSQQSSGGNGSGGASGGSTGNSNGYLDSSSEFYG
SYAGRNRFHDGYPPEFTPYDAQSFQSMGPQPTAMDQWGAAHAHQHPAAYM
STLGLDKGLLGGYTTQGGVPCFTGSGPIQLWQFLLELLLDKTCQSFISWT
GDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAG
KRYVYRFVCDLQNLVGHTPEELVAKYDLKIEKKDVD*
BS33184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnt-PD | 636 | CG17077-PD | 1..636 | 1..636 | 3475 | 100 | Plus |
| pnt-PB | 718 | CG17077-PB | 135..718 | 53..636 | 3144 | 99 | Plus |
| pnt-PC | 623 | CG17077-PC | 144..623 | 171..636 | 2153 | 85 | Plus |
| pnt-PE | 625 | CG17077-PE | 228..625 | 239..636 | 2151 | 99.5 | Plus |
| Ets65A-PA | 490 | CG7018-PA | 222..405 | 409..618 | 354 | 42.9 | Plus |
