BS33194.complete Sequence
1778 bp assembled on 2014-03-06
GenBank Submission: KX806235
> BS33194.complete
GAAGTTATCAGTCGACATGGGCATGAAATTCCAAAAGATCCTGGTTTTGG
CTGGTATTGTAATAGGATTCCTCTCCATCATCGTTGTCCTGGCCGGCACG
CTGCTTAAGAACTCCGTACCCAATGTCTTGGCACCAGTGGAGCGGCACTT
TGCATTTGACTACGTGATTGTGGGTGGTGGAACTGGAGGCAGCACACTTA
CCTCGCTACTGGCCAAAAACAGCAATGGGAGTGTTCTTCTCATCGAGGCA
GGTGGTCAGTTTGGCCTCCTGAGTCGGATTCCCTTGCTGACCACCTTTCA
GCAGAAGGGCATCAATGACTGGTCGTTCCTTTCTGTGCCACAGAAACACT
CCTCCAGAGGTCTCATTGAACGAAGGCAGTGCCTCCCGAGGGGCAAAGGA
CTGGGTGGATCCGCCAATCTGAACTACATGCTGCACTTCGATGGTCATGG
ACCGGATTTTGATTCCTGGCGGGATCACCACAATCTTAGCGATTGGAGCT
GGGCCCAAATGAGATCTTTTATGGCTGCCGCCAAGCCCAAGAACCCAGAC
ATGCTCGAAATTCCCCGTCGCTACTCCAAATTAACTGAAGCTTTGGAGGA
AGCGCAGGCGCAGTTTGCCTACAAGGATTGGATCTTTAGACGCTCATTGT
ATAATATTAGGAATGGTTTGCGTCATTCGGTGGTACAGCAGTTCCTTAAC
CCGGTCATACATCACTCCAATCTGCGCCTGCTGCCGGATGCTTTGGTGAA
ACGGATTCAACTTGCCCCAAGTCCGTTCCTCCAAGCCACCTCGATTCTCG
TGGGGATTAAGGACGAGGAGAACAGGGAGAAAGAATTTAGCATCGAGCTC
CTGATGGCATCTGGAATTGGAGACGTGTCCGCCCTGAAGAAACTTGGTAT
TCCCGCTCAGCATAGCTTGCCTTTGGTGGGCCACAACCTGCACGACCACT
TTAATCTTCCGCTTTTCGTATCGATGGGAGTCACTGGACCCACACTAAAC
CAGAACACTCTCTTGAATCCCATGACCTTGATCAACTACCTGAGCTCTGG
TTCGGGACCCTTGGGGAACTTTGGAGTGCTGGGAAATGTAGTCAGCTATG
GAGGATTGGGAGCCCCGCCCTACGGCATCACCTTCTTTGGAGCCGGCGCC
ATCGACGAGTCTGCTCTGATGTCCATATCAAATTTCAAAGGTCCAGCATT
CCGGGCGCTCTTTCCACGCTATTACAATTCCTCGCAGGAGGGATTCGTGG
TCATCTCCAGCTGCCTGCAACCAAAGTCGCGTGGATCTGTGGGACTCCTT
AACAGACACATGCGAAGGAATCCCCTAATAGATCCAAACTATCTTAGCAG
CGAAGAGGACGTGGCCTGCACCATTTCCGCCATTCGAAGTGCAGTCGAGC
TGGTCAACTCTACTGCCTTTGCTGCACTGCATCCCCGCATCCATTGGCCG
CGCGTGCAGGAGTGCTCCAACTTTGGTCCCTTCGAGCGAGATTTCTTCGA
CAACCGTCCATCGGATCAATACCTGGAGTGTCTGATGCGGCACGTTGGCT
TGGGATCCCATCATCCGGGTGGAACATGCGCCCTCGGCAGCGTTGTGGAC
TCGCAATTAAGATTAAAAGGGGTATCCAATGTGCGGGTGGTAGATGCTAG
TGTACTACCCCGTCCGATCTCGGGAAATCCCAACTCGGTGGTGGTGGCCA
TCGCGTTGAGAGCCGCCTCTTGGATTCTGAAGAGCGAACTGCAGGCCGGT
GATTCGAAATGAAAGCTTTCTAGACCAT
BS33194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaG-RB | 1746 | CG6728-PB | 1..1746 | 17..1762 | 8730 | 100 | Plus |
ninaG-RA | 1794 | CG6728-PA | 878..1794 | 846..1762 | 4585 | 100 | Plus |
ninaG-RA | 1794 | CG6728-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaG-RB | 1889 | CG6728-RB | 33..1780 | 16..1763 | 8740 | 100 | Plus |
ninaG-RA | 1937 | CG6728-RA | 911..1828 | 846..1763 | 4590 | 100 | Plus |
ninaG-RA | 1937 | CG6728-RA | 33..864 | 16..847 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11420699..11421376 | 847..170 | 3390 | 100 | Minus |
3R | 32079331 | 3R | 11420099..11420652 | 1399..846 | 2770 | 100 | Minus |
3R | 32079331 | 3R | 11419835..11420048 | 1611..1398 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 11421455..11421589 | 170..36 | 675 | 100 | Minus |
3R | 32079331 | 3R | 11419485..11419596 | 1763..1652 | 560 | 100 | Minus |
3R | 32079331 | 3R | 11419739..11419781 | 1652..1610 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:07:00 has no hits.
BS33194.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-06 11:09:56 Download gff for
BS33194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaG-RB | 34..1778 | 17..1761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:40 Download gff for
BS33194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaG-RB | 34..1778 | 17..1761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:40 Download gff for
BS33194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11419487..11419595 | 1653..1761 | 100 | <- | Minus |
3R | 11419739..11419779 | 1612..1652 | 100 | <- | Minus |
3R | 11419835..11420046 | 1400..1611 | 100 | <- | Minus |
3R | 11420099..11420650 | 848..1399 | 100 | <- | Minus |
3R | 11420699..11421375 | 171..847 | 100 | <- | Minus |
3R | 11421455..11421589 | 36..170 | 100 | <- | Minus |
3R | 11421642..11421660 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-06 11:09:56 Download gff for
BS33194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7245557..7245768 | 1400..1611 | 100 | <- | Minus |
arm_3R | 7245209..7245317 | 1653..1761 | 100 | <- | Minus |
arm_3R | 7245461..7245501 | 1612..1652 | 100 | <- | Minus |
arm_3R | 7245821..7246372 | 848..1399 | 100 | <- | Minus |
arm_3R | 7246421..7247097 | 171..847 | 100 | <- | Minus |
arm_3R | 7247177..7247311 | 36..170 | 100 | <- | Minus |
arm_3R | 7247364..7247382 | 17..35 | 100 | | Minus |
BS33194.pep Sequence
Translation from 16 to 1761
> BS33194.pep
MGMKFQKILVLAGIVIGFLSIIVVLAGTLLKNSVPNVLAPVERHFAFDYV
IVGGGTGGSTLTSLLAKNSNGSVLLIEAGGQFGLLSRIPLLTTFQQKGIN
DWSFLSVPQKHSSRGLIERRQCLPRGKGLGGSANLNYMLHFDGHGPDFDS
WRDHHNLSDWSWAQMRSFMAAAKPKNPDMLEIPRRYSKLTEALEEAQAQF
AYKDWIFRRSLYNIRNGLRHSVVQQFLNPVIHHSNLRLLPDALVKRIQLA
PSPFLQATSILVGIKDEENREKEFSIELLMASGIGDVSALKKLGIPAQHS
LPLVGHNLHDHFNLPLFVSMGVTGPTLNQNTLLNPMTLINYLSSGSGPLG
NFGVLGNVVSYGGLGAPPYGITFFGAGAIDESALMSISNFKGPAFRALFP
RYYNSSQEGFVVISSCLQPKSRGSVGLLNRHMRRNPLIDPNYLSSEEDVA
CTISAIRSAVELVNSTAFAALHPRIHWPRVQECSNFGPFERDFFDNRPSD
QYLECLMRHVGLGSHHPGGTCALGSVVDSQLRLKGVSNVRVVDASVLPRP
ISGNPNSVVVAIALRAASWILKSELQAGDSK*
BS33194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaG-PB | 581 | CG6728-PB | 1..581 | 1..581 | 3015 | 100 | Plus |
ninaG-PA | 597 | CG6728-PA | 1..597 | 1..581 | 2988 | 97.3 | Plus |
CG6142-PA | 616 | CG6142-PA | 1..603 | 3..570 | 574 | 27.8 | Plus |
CG9522-PA | 616 | CG9522-PA | 51..611 | 47..570 | 498 | 29.2 | Plus |
CG9521-PA | 621 | CG9521-PA | 47..613 | 30..570 | 490 | 28.1 | Plus |