BS33218.complete Sequence
1490 bp assembled on 2014-01-22
GenBank Submission: KX803728
> BS33218.complete
GAAGTTATCAGTCGACATGAAGTATACCCTAGTAGTGCTCGCCCTGCTTG
CACCTCTGACTGCAGCAGCTAGTCTGGGTGAACAGAAACCGGAGGCGAAT
GCGTTCGTCAAATCTCTGAGAGAACTGCACCGAGGTCCTCCAGTTGAACC
AATGAAGACCAGGGCTAAGGTGGAGGAGCGCTGGATCACCCAGAAACTAG
ATAACTTCGATGACAGCAACAACGCCACCTGGCAGGATCGAATCTATATC
AACAACAAGTACTTCGTTGATGGCTCTCCCATCTTTATCTACTTGGGCGG
CGAGTGGGCTATCGATCCTAGTGGGATTACCTCTGGACTATGGAAGGACA
TTGCTAAGCAGCACAACGGCTCCCTTCTCTACACTGAACATCGCTTCTTT
GGCCAGAGTATCCCTATAACTCCTCTGTCCACTGAGAATTTGGCCAAATA
CCAGAGCGTGGAGCAGGCCCTGGCTGATGTGATTAACGTGATTGCCACGC
TGAAGCAGGAGGACAAGTACAAGGACTCCAAGGTTGTGGTCTCTGGTTGC
TCCTACTCGGCAACCATGGCCACCTGGATCAGGAAGCTCTATCCGGAAAT
CATCAGGGGCAGCTGGGCCTCGTCTGCACCACTCCTGGCTAAGGTGAACT
TCAAGGACTACATGAAGGTGGTCGGCGAGTCGTACGCTACCCTTGGAGGA
CAATATTGCTATGATCTGATCGATAACGCCACCTCGTACTATGAAAATCT
GTTCGAGATTGGAAATGGCACTCAGGCTGTGAAGGAATTGAACTTGTGCT
CCAACTTTAATGTAAACAGCGAACAAGACCGTTGGCAGATCTTCAGCACT
ATTGCAAACATTTTTGCTGGCATTGCTCAGTACCAAAAACCAGAGAAATA
TGATATACCCACCTACTGCTCGATCCTGAGAGAGTTCAGTGACGATGATT
CTGTTGCTTTGTCCAAGTTCATTAATTGGAAAATCAATGAGCATTCCGGA
GCTTGCCTTAGCACGACCTTTAAGGGAGCTGTTGGCTACTACGAATGGTC
TAAGGAGAACTACCAGGATAGTGACTTGCCCTGGATTTTCCAGACCTGCA
GCGAGTTCGGATGGTTCCAGTCTTCCGGCAGCAGAAGCCAACCCTTTGGA
TCCACTTTTCCGGCCACTCTCTATGAGGACACCTGCGAGGGGGTCTTTGG
AGCGAAGTACGACTCGGCTGGCATCCACGCTAATATCCGCGCAACAAACG
ATGACTTCGGTGGCCTAAACGTTAATGCCACCAACATCTATTTTGTGCAG
GGAGCTCTTGACGGTTGGAGTAAGGTGGGTGCTGGAGTTGCCCAGGGAGC
CACCATTATCCCATACGCCTCCCATTGTCCCGATACTGGATCGATCAGTG
CCAGCGATAGTGCCGAACTGGTGGCCTCCAAGAAAAAGCTGATCAAGCTC
GTGGCCCAATGGCTGGAGGATTAAAAGCTTTCTAGACCAT
BS33218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3739-RB | 1458 | CG3739-PB | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3739-RB | 1586 | CG3739-RB | 17..1474 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19393904..19394371 | 421..888 | 2340 | 100 | Plus |
| 3R | 32079331 | 3R | 19394673..19395076 | 1071..1474 | 2020 | 100 | Plus |
| 3R | 32079331 | 3R | 19393376..19393597 | 17..238 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 19394427..19394610 | 889..1072 | 920 | 100 | Plus |
| 3R | 32079331 | 3R | 19393660..19393841 | 239..420 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:54:10 has no hits.
BS33218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:27:42 Download gff for
BS33218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3739-RB | 17..1472 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:26:10 Download gff for
BS33218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3739-RB | 17..1472 | 17..1472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:26:10 Download gff for
BS33218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19393376..19393597 | 17..238 | 100 | -> | Plus |
| 3R | 19393660..19393841 | 239..420 | 100 | -> | Plus |
| 3R | 19393904..19394371 | 421..888 | 100 | -> | Plus |
| 3R | 19394427..19394608 | 889..1070 | 100 | -> | Plus |
| 3R | 19394673..19395074 | 1071..1472 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:27:42 Download gff for
BS33218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15219098..15219319 | 17..238 | 100 | -> | Plus |
| arm_3R | 15219382..15219563 | 239..420 | 100 | -> | Plus |
| arm_3R | 15219626..15220093 | 421..888 | 100 | -> | Plus |
| arm_3R | 15220149..15220330 | 889..1070 | 100 | -> | Plus |
| arm_3R | 15220395..15220796 | 1071..1472 | 100 | | Plus |
BS33218.pep Sequence
Translation from 16 to 1473
> BS33218.pep
MKYTLVVLALLAPLTAAASLGEQKPEANAFVKSLRELHRGPPVEPMKTRA
KVEERWITQKLDNFDDSNNATWQDRIYINNKYFVDGSPIFIYLGGEWAID
PSGITSGLWKDIAKQHNGSLLYTEHRFFGQSIPITPLSTENLAKYQSVEQ
ALADVINVIATLKQEDKYKDSKVVVSGCSYSATMATWIRKLYPEIIRGSW
ASSAPLLAKVNFKDYMKVVGESYATLGGQYCYDLIDNATSYYENLFEIGN
GTQAVKELNLCSNFNVNSEQDRWQIFSTIANIFAGIAQYQKPEKYDIPTY
CSILREFSDDDSVALSKFINWKINEHSGACLSTTFKGAVGYYEWSKENYQ
DSDLPWIFQTCSEFGWFQSSGSRSQPFGSTFPATLYEDTCEGVFGAKYDS
AGIHANIRATNDDFGGLNVNATNIYFVQGALDGWSKVGAGVAQGATIIPY
ASHCPDTGSISASDSAELVASKKKLIKLVAQWLED*
BS33218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3739-PB | 485 | CG3739-PB | 1..485 | 1..485 | 2566 | 100 | Plus |
| CG18493-PA | 480 | CG18493-PA | 6..479 | 5..483 | 1199 | 48.6 | Plus |
| CG3734-PB | 473 | CG3734-PB | 10..473 | 18..484 | 948 | 41.1 | Plus |
| CG3734-PA | 473 | CG3734-PA | 10..473 | 18..484 | 948 | 41.1 | Plus |
| CG9953-PA | 508 | CG9953-PA | 55..501 | 53..484 | 555 | 30.4 | Plus |
