BS33279.complete Sequence
1100 bp assembled on 2014-01-22
GenBank Submission: KX801052
> BS33279.complete
GAAGTTATCAGTCGACATGGTGGGATCTCGAGTGTATGTGGGCGGTCTGC
CCTACGGAGTGCGCGAGCGCGATTTGGAGCGCTTTTTCAAAGGCTACGGC
CGCACACGCGACATCCTCATCAAAAATGGCTACGGCTTTGTGGAATTCGA
AGACTATCGTGATGCCGACGATGCCGTCTATGAACTGAATGGCAAAGAGC
TGCTTGGCGAACGTGTGGTTGTTGAACCCGCCAGGGGTACCGCTCGTGGC
AGCAACCGCGACCGCTACGACGATCGATATGGTGGTCGGCGGGGGGGCGG
GGGCGGTCGTTACAACGAAAAAAACAAAAATTCCAGATCATCCTCTCGTT
ATGGCCCACCGTTGCGCACTGAGTACCGACTGATTGTGGAGAATTTGTCT
AGCCGCGTTAGCTGGCAGGATCTCAAGGATTACATGCGCCAGGCTGGCGA
GGTCACCTATGCCGATGCCCACAAGCAGCGTCGCAATGAGGGCGTGGTTG
AGTTCGCCTCGTTGTCGGACATGAAGACGGCCATTGAGAAGTTGGATGAC
ACCGAGCTAAACGGCAGGCGGATCCACTTGGTCGAGGATCGTCGCGGAGG
ACGCAGCGGTGGTGGCGGCGGCAGCGGACGTGGACGCTCCCGTTCGTCCA
GCTCCCGATCGCGCTCCCGATCCCGCAGGCGTTCTCGCTCTCGCCGCTCG
TCGCACTCGCGCTCCAAGTCTCGCAGCCGCTCCAAATCTCGTGGCGGACG
CTCCAAGTCCAAGTCGCCAGTCAAGTCTCGTTCTCGCTCCCGCTCGCGAT
CCAACAAATCGCGTGACGTGTCCAAGTCCAAGTCAAAGTCCCACTCCCGC
ACCCGCTCCCGTTCGCCCAAACGTGAGCGTGACTCCCGTTCCCGATCGCG
GTCCGTCTCGAAGCGCGAGTCCCGTTCCCGCTCACGTTCCAAGTCCATCC
ACCGCGACTCCCGTTCACGCGATCGATCCGCATCGGCTGAAAACAAGTCG
CGTTCGCGCTCACGCTCCCGTTCGGCCTCGCCCAAAAATGGAAACGCCTC
ACCGGACCGCAATAACGAGAGCATGGACGATTAGAAGCTTTCTAGACCAT
BS33279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-RO | 1068 | CG10851-PO | 1..1068 | 17..1084 | 5340 | 100 | Plus |
| B52-RM | 1068 | CG10851-PM | 1..1068 | 17..1084 | 5340 | 100 | Plus |
| B52-RN | 1053 | CG10851-PN | 1..1053 | 17..1084 | 5080 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-RO | 1580 | CG10851-RO | 154..1223 | 16..1085 | 5350 | 100 | Plus |
| B52-RM | 1590 | CG10851-RM | 164..1233 | 16..1085 | 5350 | 100 | Plus |
| B52-RN | 1725 | CG10851-RN | 314..1368 | 16..1085 | 5090 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13665589..13665901 | 492..804 | 1565 | 100 | Plus |
| 3R | 32079331 | 3R | 13666084..13666248 | 805..969 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 13661733..13661860 | 16..143 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 13666418..13666534 | 969..1085 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 13662296..13662404 | 213..321 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 13662955..13663052 | 322..419 | 490 | 100 | Plus |
| 3R | 32079331 | 3R | 13665449..13665526 | 415..492 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 13662160..13662231 | 142..213 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:54:19 has no hits.
BS33279.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:27:45 Download gff for
BS33279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RM | 165..1232 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:26:15 Download gff for
BS33279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RM | 165..1232 | 17..1084 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:26:15 Download gff for
BS33279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13661734..13661859 | 17..142 | 100 | -> | Plus |
| 3R | 13662161..13662231 | 143..213 | 100 | -> | Plus |
| 3R | 13662297..13662404 | 214..321 | 100 | -> | Plus |
| 3R | 13662955..13663051 | 322..418 | 100 | -> | Plus |
| 3R | 13665453..13665526 | 419..492 | 100 | -> | Plus |
| 3R | 13665590..13665901 | 493..804 | 100 | -> | Plus |
| 3R | 13666084..13666248 | 805..969 | 100 | -> | Plus |
| 3R | 13666419..13666533 | 970..1084 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:27:45 Download gff for
BS33279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9491175..9491248 | 419..492 | 100 | -> | Plus |
| arm_3R | 9487456..9487581 | 17..142 | 100 | -> | Plus |
| arm_3R | 9487883..9487953 | 143..213 | 100 | -> | Plus |
| arm_3R | 9488019..9488126 | 214..321 | 100 | -> | Plus |
| arm_3R | 9488677..9488773 | 322..418 | 100 | -> | Plus |
| arm_3R | 9491312..9491623 | 493..804 | 100 | -> | Plus |
| arm_3R | 9491806..9491970 | 805..969 | 100 | -> | Plus |
| arm_3R | 9492141..9492255 | 970..1084 | 100 | | Plus |
BS33279.pep Sequence
Translation from 16 to 1083
> BS33279.pep
MVGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDA
DDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYN
EKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYAD
AHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRSGGG
GGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKS
PVKSRSRSRSRSNKSRDVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKR
ESRSRSRSKSIHRDSRSRDRSASAENKSRSRSRSRSASPKNGNASPDRNN
ESMDD*
BS33279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-PO | 355 | CG10851-PO | 1..355 | 1..355 | 1796 | 100 | Plus |
| B52-PM | 355 | CG10851-PM | 1..355 | 1..355 | 1796 | 100 | Plus |
| B52-PN | 350 | CG10851-PN | 1..350 | 1..355 | 1754 | 98.6 | Plus |
| B52-PC | 350 | CG10851-PC | 1..350 | 1..355 | 1754 | 98.6 | Plus |
| B52-PA | 350 | CG10851-PA | 1..350 | 1..355 | 1754 | 98.6 | Plus |
