BS33304.complete Sequence
2348 bp assembled on 2014-03-06
GenBank Submission: KX804527
> BS33304.complete
GAAGTTATCAGTCGACATGGCCATGATTTTCACACGGAAATCGCTGAAGC
TGCTCAACTATCGCCTCAAATGCCTAAGTTTGTCCTGCCCAGGAGGAAGG
AGAGGAATCCAAAGCAGTTCCAACGGAGAAGCGCCCTCCGTGGAAGTCAA
CTTCAGCAATGGACGTAACATGACCTTCAGTTCCGGCCGCCTGGCGAGAT
TTGCGAATGGAACAGCTGTGTGCCAAATGGGCGATACCGCCGTCATGGTC
ACCGCGGTGGCCAAGGCGAAGCCAAATCCCGGCCAGGGATTCATGCCTCT
GGTGGTTGACTACCGACTGAAAAACGCCGCCTCTGGCAGAATACCCATGA
ACTTTATGCGCCGCGAACTGGGCCCCTCGGAAAAAGAGATCCTGTCCGCC
CGCCTTATCGACCGTTCGCTACGCCCGCTCTTCCACAAAGATTATCGCAC
GGAGACACAGCTGGTGTGCAACATGTTGGCTATGGACGCGGTGCACAGTC
CGGATGTGCTTGCAATCAATGCCGCTTCCATGGCGCTATCTCTAAGTGAC
ATTCCCTGGAATGGACCCATTGGAGCTGTGCGCGTTGGCCTCTGCGACGG
CGAGGTGCTGATCAACCCCACGCGCCGGGAGCTGCAGACTTCGCAACTGG
ATTTGGTAGTCTCCGCCACCAAACAAAACCTCGTCGTTATGTTGGAGGGC
AAGGGGAATGTGGTTCTTCAGCAGGACCTTCTAAAGGCTATCAAACAAGG
GACTCGTGAGGCCCAATTCATTATCCACGAGATCGAGCGACTGCAGAAGG
CCTATGGTCGACAGAAGCGCGAAGTGGAAGTGGCTGCCGAAGTAGATCCC
GAACTGGGGAAAGCCGTTCGTAGCATGTGCGAAATGCGGCTGAGAGAGAT
CTTCCAGGATTCGACGCACGACAAGATGTCTCGTGACAATGCGGTTAACG
AGGTGCGCTCCAACGTTATTGACAAGGTGTGGAGTTCGTTTCCGGATACC
GAACCGTCGCTTATTACCGAGCAGTTCAACCAGACCAGTAGAACCATTTT
TCGCGAACTGATCTTTGAGCGGGGTCTGCGTTGCGATGGACGAGATTACG
ACCAGCTGAGGAACATCTCCTGCCAGGTGGACATGTACAAGCCTCTCCAC
GGATCCGCCCTATTCCAGCGCGGTCAGACGCAGGTCTTCTGCACGGTTAG
CTTGGACTCGCAGGAAAGCGCAATGAAACTTGACTCGTTGGCTGCTTTAG
ATAGCGGTGGCCTGAAGGCCAAGAACTTTATGCTGCACTATGAGTTCCCG
CCCTATGCCACGGGTGAAGTGGGTCGGATTGGTCCAGTGGGTCGCCGGGA
AATGGGCCACGGAGCCTTGGCGGAGAGATCGTTGCTTCCCACCCTGCCGA
ATGATTATCCCTTTACCGTAAGACTCACCTCTGAAGTCCTGGAATCCAAT
GGGAGCAGTAGCATGGCCAGCGTTTGCGGTGGCTCCTTGGCCCTTATGGA
CGCCGGCGTTCCAGTGAGCGCACCTGCGGCAGGTGTGGCCATTGGCCTGG
TCACAAAGTTCGAGAACGACGACACTAAGCACCTGCAGGACTACCGCATT
CTCACCGACATCCTGGGCATCGAAGATTACATGGGCGACATGGACATGAA
GGTGGCTGGCACGAGAAAAGGCTTCACCGCCATCCAGGCGGACCTCAAGA
TCCCGGGAATTCCTCTTAAGGTTGTGATGGAATCGCTACAAAAGGCCACC
GATGCCAAATCTAATATTCTGGACATCATGAGTGAGGCTATTAGGGAACC
TCGAAAATACCCCAAGGAGAGCTGGCCAGTGAGTGAAACCCTAACTGTAG
AGCCGCAACAGAGGGCGCAGTTAATTGGTCCCAGCGGCCTTCACATGAAG
CGGATTTACTTGGAAACGGGCACCTCCCTAACAGCAGTCGATGAGACCCA
TTTCAATGTTTTTGCTCCTTCGCAAGCAGCCATGGATGAGGCCAAGGAGC
TGATCGAGGGCTACATGGTGAAGGAACGAGTGCCGGACCTGGAGTTCGGC
GGAATCTACACTGCCAAAATCACCGAATTGCGAGACACCGGAGTAATGGT
CATCCTCTATCCCAGTATGCCACCCGCTTTGCTGCACAACTCGCAGCTGG
ATCAGCGCAAGATAGCCCATCCCTCTGCCCTAAACCTGGAAGTGGGTCAG
GAGATCCAGGTCAAGTACTTTGGCCGCGATCCCGTCTCCGGCTTTATGCG
TCTTTCGCGAAAGGTTCTCCAAGGGCCCGCCCTGGGAATCCCCCGTTCGC
TCAACAAATCTGCCGGAGAGAGCGGAACGTGAAAGCTTTCTAGACCAT
BS33304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11337-RE | 2316 | CG11337-PE | 1..2316 | 17..2332 | 11580 | 100 | Plus |
| CG11337-RD | 2316 | CG11337-PD | 1..2316 | 17..2332 | 11580 | 100 | Plus |
| CG11337-RA | 2316 | CG11337-PA | 1..2316 | 17..2332 | 11580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11337-RE | 2647 | CG11337-RE | 115..2430 | 17..2332 | 11580 | 100 | Plus |
| CG11337-RD | 2821 | CG11337-RD | 12..2327 | 17..2332 | 11580 | 100 | Plus |
| CG11337-RA | 2668 | CG11337-RA | 136..2451 | 17..2332 | 11580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31402655..31403876 | 1803..582 | 6110 | 100 | Minus |
| 3R | 32079331 | 3R | 31402054..31402583 | 2332..1803 | 2650 | 100 | Minus |
| 3R | 32079331 | 3R | 31403936..31404356 | 582..162 | 2105 | 100 | Minus |
| 3R | 32079331 | 3R | 31404412..31404557 | 162..17 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:08:09 has no hits.
BS33304.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-06 11:10:19 Download gff for
BS33304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11337-RA | 136..2450 | 17..2331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:08 Download gff for
BS33304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11337-RA | 136..2450 | 17..2331 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:08 Download gff for
BS33304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31402055..31402582 | 1804..2331 | 100 | <- | Minus |
| 3R | 31402655..31403875 | 583..1803 | 100 | <- | Minus |
| 3R | 31403936..31404355 | 163..582 | 100 | <- | Minus |
| 3R | 31404412..31404557 | 17..162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-06 11:10:19 Download gff for
BS33304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27227777..27228304 | 1804..2331 | 100 | <- | Minus |
| arm_3R | 27228377..27229597 | 583..1803 | 100 | <- | Minus |
| arm_3R | 27229658..27230077 | 163..582 | 100 | <- | Minus |
| arm_3R | 27230134..27230279 | 17..162 | 100 | | Minus |
BS33304.pep Sequence
Translation from 16 to 2331
> BS33304.pep
MAMIFTRKSLKLLNYRLKCLSLSCPGGRRGIQSSSNGEAPSVEVNFSNGR
NMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVVDYR
LKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLV
CNMLAMDAVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLIN
PTRRELQTSQLDLVVSATKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQ
FIIHEIERLQKAYGRQKREVEVAAEVDPELGKAVRSMCEMRLREIFQDST
HDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFNQTSRTIFRELIF
ERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQE
SAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGA
LAERSLLPTLPNDYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPV
SAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTR
KGFTAIQADLKIPGIPLKVVMESLQKATDAKSNILDIMSEAIREPRKYPK
ESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFNVFA
PSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILYPS
MPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKV
LQGPALGIPRSLNKSAGESGT*
BS33304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11337-PE | 771 | CG11337-PE | 1..771 | 1..771 | 3924 | 100 | Plus |
| CG11337-PD | 771 | CG11337-PD | 1..771 | 1..771 | 3924 | 100 | Plus |
| CG11337-PA | 771 | CG11337-PA | 1..771 | 1..771 | 3924 | 100 | Plus |
| CG11337-PB | 771 | CG11337-PB | 1..771 | 1..771 | 3924 | 100 | Plus |
