BS33305.complete Sequence
1661 bp assembled on 2014-07-17
GenBank Submission: KX804115
> BS33305.complete
GAAGTTATCAGTCGACATGGCCCCAGATAGCGCTTGCTCTTGTTTCATCA
CCGCCTTTCTGATTCCCTACCTGTTGATGGTAATTTTAGCCGGCATACCC
CTGTTTTATATGGAAATTCTGATCGGTCAGTTCTCGAGCACCGGATGCAC
TGGCATGTTTCGCATGACGCCTCTGCTGAAGGGAACGGGAATCGCTCAGG
TGGTGGTCAATGCCTACTGCGTGTGCTACTACTCGGTGATCATATCGTAT
CCCATTCGGATGATCTTCTACTGTTTCTTCAAGAAGGTGCCCTGGGAGGA
CTGTTCCAATTCATGGAATACCGACGACTGTGTAACCGCGTCTGACATGG
GAAAGCAAAATAGTAGTGATGTGTTCAAAACTTCCGCCGATGAATTCTTC
CACTTGGAAGTACTTAGAATCTCAACAGACATCTCCGACTTGGGTGGCAT
GGTATGGGAACAATTAACTGCCTTGATTATCACATGGATTATTATTTACT
TCTGCCTAATGCGAGGAATTAAGTCGGTTGGCAAGGTTGTGTACTTTACA
GTCCCCTTCCCTTACTTGCTGCTCTTCATTCTGCTCATCAGAGGAGCCAC
TTTGCCCGGAGCCTGGAAAGGCATAAAGTTCTACCTGTATCCGGAGTGGC
ACCGCTTGCTGGACCTCAAAGTCTGGGCCGATGCTGCCGTCCAGATGTTC
TTTGGCATAGGTCCCGGCTGGGGTGGTATCGTCAACATGGCCAGTTTCAG
TAGCTTTCGAAATAACGCCAAGTGCGACTCGGTTCTCATAGTATCGATCA
ATGTGTTCACCAGCTTATTGGCCGGATTTGTGGTCTTCTCCGTGTTGGGT
TTTCTCTCTGAAAAATCGGGCATACCCGTGGAATCGGTGGCCACCGGAGG
AGCTGGACTGGCCTTCGTCACGTATCCGGAGGCCATTGCCTTGCTGCCTG
TCCCGCAGCTCTGGGCGCTCATGTTTTTCTTTATGCTCTTTTTGCTGGGC
ATCGACAGTGTGTTTGTACAACTGGAGGCCATCATGTCATCGATATTGGA
TGAGTGGTATTGGGTGAGAAGTCACAAGTGCAAACTAACGCTCATTTCGT
GCTTAATCTTTCTCGGACTCTCGTCAATAATGTGCACAAATGGCGGCATG
TTTATTCTTCAGCTGTTTGACTGGTACTCCTCGGCGATAGCCGTAATTGT
CATTTGCCTGGTGGAGATTATTATGGTCGCCTGGATTTATGGCATAAAAA
ATTTCATGTTAGATGTCGAGTTTATGCTCGGAAAACGGCCAACTCTATAT
TGGAGAATCGTGTGGCAGGTCGTCACACCTGTCATTATAATTTTTATTCT
TATAACTAGCATTGTATTCATAAGGACAATCACCTATAATAACATCCCGT
ATCCTCAGTGGGCCATTATAATCGGCTGGGCCAGTTGTTTTACATCAGTT
ATGTGGATACCGCTCTACATATTCTATATCATGATCCGTAAGCGGGCCAC
ACTATGTGACAGCCTAAAGAAACGCCTAAAACCTTTGGACTGGACACCTG
CGGATCCACAAGATCGTGCAGAATACGAGGCCTTCCGGAGGCAACGCCGA
ATGCCGGGATTTATGTCTGACACGGACATGGAGAGCTCGAAGTAGAAGCT
TTCTAGACCAT
BS33305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntl-RB | 1629 | CG7075-PB | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| Ntl-RA | 1773 | CG7075-PA | 179..1773 | 51..1645 | 7975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntl-RB | 1860 | CG7075-RB | 81..1711 | 16..1646 | 8155 | 100 | Plus |
| Ntl-RA | 2069 | CG7075-RA | 325..1920 | 51..1646 | 7980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7712482..7712816 | 526..860 | 1675 | 100 | Plus |
| 2L | 23513712 | 2L | 7713539..7713842 | 1343..1646 | 1520 | 100 | Plus |
| 2L | 23513712 | 2L | 7711832..7712127 | 51..346 | 1480 | 100 | Plus |
| 2L | 23513712 | 2L | 7713280..7713480 | 1142..1342 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 7712876..7713028 | 860..1012 | 765 | 100 | Plus |
| 2L | 23513712 | 2L | 7713095..7713225 | 1012..1142 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 7712304..7712429 | 403..528 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 7712183..7712238 | 347..402 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 15:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 2534..2568 | 1358..1324 | 121 | 82.9 | Minus |
BS33305.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:53:54 Download gff for
BS33305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntl-RB | 82..1710 | 17..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:22 Download gff for
BS33305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntl-RB | 82..1710 | 17..1645 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:22 Download gff for
BS33305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7713096..7713224 | 1013..1141 | 100 | -> | Plus |
| 2L | 7712877..7713028 | 861..1012 | 100 | -> | Plus |
| 2L | 7711568..7711601 | 17..50 | 100 | -> | Plus |
| 2L | 7711832..7712127 | 51..346 | 100 | -> | Plus |
| 2L | 7712183..7712238 | 347..402 | 100 | -> | Plus |
| 2L | 7712304..7712427 | 403..526 | 100 | -> | Plus |
| 2L | 7712483..7712816 | 527..860 | 100 | -> | Plus |
| 2L | 7713280..7713480 | 1142..1342 | 100 | -> | Plus |
| 2L | 7713539..7713841 | 1343..1645 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:53:54 Download gff for
BS33305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7711568..7711601 | 17..50 | 100 | -> | Plus |
| arm_2L | 7711832..7712127 | 51..346 | 100 | -> | Plus |
| arm_2L | 7712183..7712238 | 347..402 | 100 | -> | Plus |
| arm_2L | 7712304..7712427 | 403..526 | 100 | -> | Plus |
| arm_2L | 7712483..7712816 | 527..860 | 100 | -> | Plus |
| arm_2L | 7712877..7713028 | 861..1012 | 100 | -> | Plus |
| arm_2L | 7713096..7713224 | 1013..1141 | 100 | -> | Plus |
| arm_2L | 7713280..7713480 | 1142..1342 | 100 | -> | Plus |
| arm_2L | 7713539..7713841 | 1343..1645 | 100 | | Plus |
BS33305.pep Sequence
Translation from 16 to 1644
> BS33305.pep
MAPDSACSCFITAFLIPYLLMVILAGIPLFYMEILIGQFSSTGCTGMFRM
TPLLKGTGIAQVVVNAYCVCYYSVIISYPIRMIFYCFFKKVPWEDCSNSW
NTDDCVTASDMGKQNSSDVFKTSADEFFHLEVLRISTDISDLGGMVWEQL
TALIITWIIIYFCLMRGIKSVGKVVYFTVPFPYLLLFILLIRGATLPGAW
KGIKFYLYPEWHRLLDLKVWADAAVQMFFGIGPGWGGIVNMASFSSFRNN
AKCDSVLIVSINVFTSLLAGFVVFSVLGFLSEKSGIPVESVATGGAGLAF
VTYPEAIALLPVPQLWALMFFFMLFLLGIDSVFVQLEAIMSSILDEWYWV
RSHKCKLTLISCLIFLGLSSIMCTNGGMFILQLFDWYSSAIAVIVICLVE
IIMVAWIYGIKNFMLDVEFMLGKRPTLYWRIVWQVVTPVIIIFILITSIV
FIRTITYNNIPYPQWAIIIGWASCFTSVMWIPLYIFYIMIRKRATLCDSL
KKRLKPLDWTPADPQDRAEYEAFRRQRRMPGFMSDTDMESSK*
BS33305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntl-PB | 542 | CG7075-PB | 1..542 | 1..542 | 2866 | 100 | Plus |
| Ntl-PA | 590 | CG7075-PA | 61..590 | 13..542 | 2799 | 100 | Plus |
| CG1732-PA | 636 | CG1732-PA | 95..606 | 13..501 | 997 | 37.3 | Plus |
| SerT-PB | 622 | CG4545-PB | 111..586 | 13..487 | 990 | 40.1 | Plus |
| SerT-PA | 622 | CG4545-PA | 111..586 | 13..487 | 990 | 40.1 | Plus |
