BS33318.complete Sequence
4010 bp assembled on 2014-03-06
GenBank Submission: KX804857
> BS33318.complete
GAAGTTATCAGTCGACATGTCTGTCGCTTTAGCGGATGAACCCTTAATTG
ACTTGGAGGAGGATTTAGAGGACGGCGAGATCGACGACGATGAGGAGGAC
GAGCAGCAATCTTCAAAAATCCAAGTCCAAAAGAAGACTTTCGTAGGGGA
CGACGATGTGCAGTTTGTGGGTGTCGAGGCTAAGAACCAAAATGACGACG
AAGATGTCGTTTACGTGGGACCATCGACAGATGCCGTTTGCCTCCAAAAC
AGCAACAGCACCAAGTCAAAAAAGCCTCGCCCATTAGAAGATGACCATGC
TAGCAGCATTGAGTTGGCGATTGCCAATGCCCTCAAGAAGAAGGGCATAG
AGCCCCCAATGCCCCGCATGCGTTCGTCTAACCAGGATACGAGCGATCAG
TCTTTGGAGGGATCCGGGGAGGGACTGGCTACCGCCAATCCCCTTCTTCA
GTCAACTCGCAGCAGCAGGCGAAGGAAACGCAAGAAAGAACGTGAGCGCG
AGCAGAAGAAAGACAAGGAGCAGCAGAACCGTTCCCGACGTGACGAGAAC
GACGTGTCTGTGGTGCCAGGCGGCGTTGAGGACATGGACGAATATGAGAT
GATGAACGTACGTGGCGGCAGCCCGCCACCAGGAGGAGCGGCACCACCCC
TTTCCAGCTGCGGTCAGCGGTTTAGTGGTGCCGATTGGGACATGGACGAC
GGGTCAGCCGCAACCGGAGCAGCTGGTCTTGGAGCGGGAGGCGGAGGGGG
TTACAACTCACACAGCAGCTATGATTCCTACTCCGATGAGGAGACAAATG
GGCCCGGGCTAATGAATCAACGCCGTCGGACCCGAAGGGATAACGAAAAG
GAGCACCAGCGTGGCGTGAATAATCGCAAGCGCAGGGATCGCGATCGCCT
TGAAGGCGGGTTAGCGGGAAGCGGCTCCAAGCGAAATCGCCGTGATTCTG
GCGAAGGAGGCGGCGGTGGACAGGAAAAGATGGGCGGCAGCAATCGCGTT
GAGCCCCGCAAGCTGGAGCTGTGCAAGTTCTATCTAATGGACTGCTGTGC
CAAGCGGGACAAGTGCTCCTACATGCACAAAGAGTTTCCCTGTAAGTACT
ACTACCTGGGGATGGATTGCTATGCAGGCGACGATTGCCTCTTTTACCAC
GGCGAACCGCTGTCCGAGCAGCTCCGCAACGTTCTGCTGAAACACATGGA
GACGGCTCCGAAGGAGATCCTTGGTGATTTCAAGCGAATATCCAGAGACA
TTGCCATTGTGCAGATGACACGGCGGCACGAGCAGCTGTGCGACCAATTG
AATCGGGAGAACACGTGGAATTCGATTGGCTGCGGCTTAATGGGCAAGCG
GCAGGACCATCAAATGCAACAACAGCAGCAACAGCTTCAGCATCAACAGC
TTCAGCAGCAGCAGGAGCAACAGCAGACGCAACAGCAGGCGGCTGCGGAT
GGCGGCGGCTGCATTCCTTCACTTTTGGACATGGTCATCAATCCACCACT
TTCAGAAAATAAGCGCAAGTCCCGCTGGACCGAAAAGATGGGTGCCAAGG
CAGCAGCTGGAGCAGCAGGTTCTTCAGAAAGGGATAGCACATCGCCGGAC
GCCAAGCCACTACCACCGCACTTGGACTTGGCTAATCTCAGTCACGTCTT
AAGTGCTGAAAACATGGCCAAGCTAAATAAGTTGGGTATTACGAATCTGG
AGCAGATGCTTCAAGTGCCGTTTGGCCAGTTGACCGAGGCTGGCCTAACT
CTGGTCGAGATCGGTGAGATTCAGCGCAAAGCCGAGGACGCCAAGCCGCA
AACCCAAGCTGAATTGGAAAGCAGCACTCCTCCTTCAAAGCGGGAAACGG
AGGCCAACAATAGTAACTCGAAGAGCAACGGACTCATCATGGTGGACTAC
ACGCAGTACCTCAAGGATGCACATGTCAGCTTTTCGGGTAACGATCCGCT
GGACGACGATCGGGATGACGACGAACAACTGATCATAGACGATGGCAACG
ATTCCACCGCCGAAGAGGACCAGCAACCTAAGAAAGCCAAGGCACCGCCA
GCCGCCACCCATGAATCAAGCACAGAGGAGGCACCCTTGCCTTCTGTTTT
CGACTTGCCGAGCTTCATGAACAACATGCTGGGTCAGGGATCCTCAGCGA
GGCAGTTGCTGCCCGCAAGTGCCACTTCGCCCAATCAGGAGAATGCGCAT
TTGCCTGGAGGAGATCAATCGACACATAAATCCGCGCCCATCGGCGGAGG
CACCTCAACCAACGTGCTTGGCCGGATTCTGTTCGGCGACAAACAATCTG
ACCCCGAGGCTAGAGCAGCTTTCTATCGCGACATAATACGCAATCCCTTC
AAGGCTCACAGTGGCGATGGCGACGTGGACTCCAGCAATGAGAACTCAAA
TTCCAATTCGCATTCCCTGACGCCAACTCCCACGCCAGAGCCGGGATCCC
AATCCCCCAAGCCGGAGGACCACGATCAGGATATGCCGGAATTGCCTGTC
ATTGCACCAGCGTTGCCGCCGACAACTCCTTCGCTCTATGTACGTCGTTC
CATGTATGACTTCGATCCCGTCAAAGAGCAAGAGCACGGGCGACAGGAGC
TTCTTACGGAGGAGAAGGAACAGTACCAGCGTGATACCGACATGCGACTG
CCGTTCGAGCCGATGAAACACTATATGCCTGCCACCGAGATCGACGCGGC
GATCTTCTCGCACACTCCGATACGCTGGCAGCTGCATGAAGTAACCATAG
AGGAGAGCAGCTATGCTCAGATTAGGGCCAGTGCTCTGCACAAGGAGCAG
CGGGAGCTACGCGATCCTCGAATGCGTCGGATTCTCGGCCTTCCGGAAAC
GCCTGATAACAGTGGACCCTTGGGCTCCGTGCCCATTATGGGCCCAAGCT
CCTTTTCGGTCGACAACATTGCGCGTTGCGCTACGACCATCGCTTCCCCA
GATTTGGAGACCGCCGTTCGTGATTCCACCCCCAGTTCACCGCCCCCGTC
CGTGGTAAACCTACCGTCAATGAGTGTGCCACCGCCGTCGATGAGGGTAC
CACCTCCGAACATACAGGTGGAAAAGCCAACTGTGCGGACAGATCCACGT
CGCGATCCCAGGAGAGCCGTTCTGCAGGCTCCAACTAAAGGTGCTAGTAC
GGCAAACACCACAGCACCCAATGCCTCTGGTGGCAGCAAGCAAATCTCGG
AAATCCGAAGCCTGCTGCAGGTTTCCAACTGGTACAACAATCTCGGCACC
AACAATAAGATTATGGTGAACCAACAGCTCGCCCTGGTCTTTACCGAGCT
CAAGAAGTTCCATCAGCTGCCGAATGATGCTCCGAAAATTTTCGATGTCA
GCTTTATAGTGAACAACACAACGTTGCAGCAGATCTTTGCCAAGCTCTTT
ATCTTTGTAGATGACAATGGCGAGGTGGTGCAGATTCCCGAGGAGCCCAA
CGGTAATGGTGCTGCTCTTGGTGGCGGCGGAGATTCTGGAGGCGGAGTAG
GAGGAGGAGGAGGAGGAGGAGGAGTAGTGCTTCCCAATCTATCGCAACCC
CCACCAAATCTGAGCCAAATGTTAAGGCTACCGCCACCGAACATACGAAT
GCTTCGCATGTCGGGAATGATGATGCAAATGGGCAACGTGGGACCCCCTT
TCAATCAGCCACCGCCACGCGGAGGATTGATGGGAATGCCTCCGAATGGC
AATGGATTAAACCAGGGCGTTGGCAATCTGGGAGGACTTGGCCAGTTGGG
GATAAACCAAGGAGGAGGACCTGTGCCCAATGGCAATCCCTTCAACCCAT
TTGGTGGGAACAATGGGGGAGGAGCTGGCGTCATGAACAACATGAATTCA
ATGGGCAACATGGGCATGGGCTTCAATAACTTCAACAATAATGGCGGCAG
AGGAGGGCACTTTCCGGGCGGAGGATCAGGCGGAAACGGCAACGGAAACA
ATCGCAACCAGCGAGGCGGCAACCACCGAAACCGCAACATTTAAAAGCTT
TCTAGACCAT
BS33318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(s)-RC | 3978 | CG6222-PC | 1..3978 | 17..3994 | 19875 | 100 | Plus |
| su(s)-RA | 3978 | CG6222-PA | 1..3978 | 17..3994 | 19875 | 100 | Plus |
| su(s)-RB | 3966 | CG6222-PB | 1..3966 | 17..3994 | 19660 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(s)-RC | 4657 | CG6222-RC | 261..4239 | 17..3995 | 19880 | 100 | Plus |
| su(s)-RA | 4901 | CG6222-RA | 505..4483 | 17..3995 | 19880 | 100 | Plus |
| su(s)-RB | 4889 | CG6222-RB | 505..4471 | 17..3995 | 19665 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 641297..643342 | 1950..3995 | 10230 | 100 | Plus |
| X | 23542271 | X | 639717..641017 | 524..1824 | 6490 | 99.9 | Plus |
| X | 23542271 | X | 638447..638724 | 17..294 | 1375 | 99.6 | Plus |
| X | 23542271 | X | 638779..639016 | 289..526 | 1190 | 100 | Plus |
| X | 23542271 | X | 641076..641202 | 1823..1949 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:08:03 has no hits.
BS33318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-06 11:10:17 Download gff for
BS33318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(s)-RA | 505..4480 | 17..3992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:06 Download gff for
BS33318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(s)-RA | 505..4480 | 17..3992 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:06 Download gff for
BS33318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 641078..641202 | 1825..1949 | 100 | -> | Plus |
| X | 638447..638720 | 17..290 | 100 | -> | Plus |
| X | 638781..639016 | 291..526 | 100 | -> | Plus |
| X | 639720..641017 | 527..1824 | 99 | -> | Plus |
| X | 641297..643339 | 1950..3992 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-06 11:10:17 Download gff for
BS33318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 535111..535235 | 1825..1949 | 100 | -> | Plus |
| arm_X | 532480..532753 | 17..290 | 100 | -> | Plus |
| arm_X | 532814..533049 | 291..526 | 100 | -> | Plus |
| arm_X | 533753..535050 | 527..1824 | 99 | -> | Plus |
| arm_X | 535330..537372 | 1950..3992 | 100 | | Plus |
BS33318.pep Sequence
Translation from 16 to 3993
> BS33318.pep
MSVALADEPLIDLEEDLEDGEIDDDEEDEQQSSKIQVQKKTFVGDDDVQF
VGVEAKNQNDDEDVVYVGPSTDAVCLQNSNSTKSKKPRPLEDDHASSIEL
AIANALKKKGIEPPMPRMRSSNQDTSDQSLEGSGEGLATANPLLQSTRSS
RRRKRKKEREREQKKDKEQQNRSRRDENDVSVVPGGVEDMDEYEMMNVRG
GSPPPGGAAPPLSSCGQRFSGADWDMDDGSAATGAAGLGAGGGGGYNSHS
SYDSYSDEETNGPGLMNQRRRTRRDNEKEHQRGVNNRKRRDRDRLEGGLA
GSGSKRNRRDSGEGGGGGQEKMGGSNRVEPRKLELCKFYLMDCCAKRDKC
SYMHKEFPCKYYYLGMDCYAGDDCLFYHGEPLSEQLRNVLLKHMETAPKE
ILGDFKRISRDIAIVQMTRRHEQLCDQLNRENTWNSIGCGLMGKRQDHQM
QQQQQQLQHQQLQQQQEQQQTQQQAAADGGGCIPSLLDMVINPPLSENKR
KSRWTEKMGAKAAAGAAGSSERDSTSPDAKPLPPHLDLANLSHVLSAENM
AKLNKLGITNLEQMLQVPFGQLTEAGLTLVEIGEIQRKAEDAKPQTQAEL
ESSTPPSKRETEANNSNSKSNGLIMVDYTQYLKDAHVSFSGNDPLDDDRD
DDEQLIIDDGNDSTAEEDQQPKKAKAPPAATHESSTEEAPLPSVFDLPSF
MNNMLGQGSSARQLLPASATSPNQENAHLPGGDQSTHKSAPIGGGTSTNV
LGRILFGDKQSDPEARAAFYRDIIRNPFKAHSGDGDVDSSNENSNSNSHS
LTPTPTPEPGSQSPKPEDHDQDMPELPVIAPALPPTTPSLYVRRSMYDFD
PVKEQEHGRQELLTEEKEQYQRDTDMRLPFEPMKHYMPATEIDAAIFSHT
PIRWQLHEVTIEESSYAQIRASALHKEQRELRDPRMRRILGLPETPDNSG
PLGSVPIMGPSSFSVDNIARCATTIASPDLETAVRDSTPSSPPPSVVNLP
SMSVPPPSMRVPPPNIQVEKPTVRTDPRRDPRRAVLQAPTKGASTANTTA
PNASGGSKQISEIRSLLQVSNWYNNLGTNNKIMVNQQLALVFTELKKFHQ
LPNDAPKIFDVSFIVNNTTLQQIFAKLFIFVDDNGEVVQIPEEPNGNGAA
LGGGGDSGGGVGGGGGGGGVVLPNLSQPPPNLSQMLRLPPPNIRMLRMSG
MMMQMGNVGPPFNQPPPRGGLMGMPPNGNGLNQGVGNLGGLGQLGINQGG
GPVPNGNPFNPFGGNNGGGAGVMNNMNSMGNMGMGFNNFNNNGGRGGHFP
GGGSGGNGNGNNRNQRGGNHRNRNI*
BS33318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(s)-PC | 1325 | CG6222-PC | 1..1325 | 1..1325 | 7005 | 100 | Plus |
| su(s)-PA | 1325 | CG6222-PA | 1..1325 | 1..1325 | 7005 | 100 | Plus |
| su(s)-PB | 1321 | CG6222-PB | 1..1321 | 1..1325 | 6962 | 99.6 | Plus |
| CG4266-PD | 1212 | CG4266-PD | 811..986 | 1152..1318 | 172 | 36.1 | Plus |
| CG4266-PA | 1215 | CG4266-PA | 814..989 | 1152..1318 | 172 | 36.1 | Plus |
