BS33319.complete Sequence
1187 bp assembled on 2014-01-24
GenBank Submission: KX804112
> BS33319.complete
GAAGTTATCAGTCGACATGAATACTACCGCCAAGGTGTTCGTCGGCAGCC
TGCCGCGCTGCAAGCCGGAGGAGCTGCGTCGACTGTTCACCAACTATGGA
TCGGTCGTTGAGTGCGACGTGATGAATCGCTGCGCCTTCGTCCATCTGGA
GAACACGGACATGGCGGAGGCGGCCATCGCAGCGCTGAATGGCACCATCT
TCAAGGGCCAGCCCATTGTGGTGGAGGCGGGCAGGCCAAAGTACGGCCCG
GGAGGTGGCAGTCGAGGTCAGCCGGGCTCTGGGGACAATCCGGGGCGCAG
GCCCTCGCAGGTTCAAGGTGGCGGGGCGGACAAGAGACCTCATGAATCCA
ATACCAACTTCAAGCGCAACTTTCGTGAGGAAGTCGGTGGCAGATTCTCC
AACGAAGGCCCAAGGAGCTCGAACTCCTCGGCCGCCAAATTTGGTCCCGT
GAGAAACGAGTCCAACTACAGACAACAGCGCAGTGCTCCATACTCGAAAG
GACCACCGAACAATGAGTCTTCCAATCAGGGACAGGGCTTTAGGAACAAA
TTTGCAGGCGGAGGCAAGTTCGGTGGAAGCGCGGGCAACGAGGGACGCTT
CGGCAGCAATCGGTTTCAGCAGCGGGACAACAGTGGACCACAGCCTGGCA
GAAGAAACTTTAAGAACAGTCCAACCAGCGGATATAGGGGAGGAGGCAAT
AATAGTGACTTTCAGGGAGGCAGCTCCAGCAGCGGGGGAGGAGGATCCGT
AAATCAGAGGGCCGGCGGCGGCGGCCCAGGTCCAAGCCATGTGCGACAGG
ATCGACGTGGATTTGCCCTGCCTGTAGAGCATCAGCAGCAGCAAATGGGC
TTCGGACGCTTTGGCAATGGACCAATGAACTCTGGCAATCGTGGGACTAA
TGGAGGAAATCCACCGGGAGGACGTGGATTTTTCAATGGAGGAGGGGGCG
GATTCAATGACAGACGCGATAGCAGTCACGAGACAAGCAGTCCCCAAGGA
GGCCCAAGCAAACGCGGAGGTTCAGGAGGTAGAAATCACAATCAGAATGG
CATAAATGCATATCACTCGGAGTTCCCGCCCTTGGGCAGTGGCGGCGGAG
GTCCAGGCCAAAGAAACCGCTTCAACGGGCCCAGACCCGGGCCAAATATG
GGCGGCAATAGAAGATTTTAAAAGCTTTCTAGACCAT
BS33319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7903-RA | 1155 | CG7903-PA | 1..1155 | 17..1171 | 5760 | 99.9 | Plus |
| CG7903-RB | 1149 | CG7903-PB | 1..1149 | 17..1171 | 5635 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7903-RA | 1515 | CG7903-RA | 72..1228 | 15..1171 | 5770 | 99.9 | Plus |
| CG7903-RB | 1509 | CG7903-RB | 72..1222 | 15..1171 | 5645 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29994148..29994740 | 903..311 | 2965 | 100 | Minus |
| 3R | 32079331 | 3R | 29994793..29995078 | 311..26 | 1430 | 100 | Minus |
| 3R | 32079331 | 3R | 29993873..29994089 | 1119..903 | 1070 | 99.5 | Minus |
| 3R | 32079331 | 3R | 29993762..29993814 | 1171..1119 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:54:25 has no hits.
BS33319.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:05 Download gff for
BS33319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7903-RA | 74..1226 | 17..1169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:26:20 Download gff for
BS33319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7903-RA | 74..1226 | 17..1169 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:26:20 Download gff for
BS33319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29993764..29993813 | 1120..1169 | 100 | <- | Minus |
| 3R | 29993873..29994088 | 904..1119 | 99 | <- | Minus |
| 3R | 29994148..29994739 | 312..903 | 100 | <- | Minus |
| 3R | 29994793..29995078 | 26..311 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:05 Download gff for
BS33319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25819486..25819535 | 1120..1169 | 100 | <- | Minus |
| arm_3R | 25819595..25819810 | 904..1119 | 99 | <- | Minus |
| arm_3R | 25819870..25820461 | 312..903 | 100 | <- | Minus |
| arm_3R | 25820515..25820800 | 26..311 | 100 | | Minus |
BS33319.pep Sequence
Translation from 16 to 1170
> BS33319.pep
MNTTAKVFVGSLPRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMA
EAAIAALNGTIFKGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQ
GGGADKRPHESNTNFKRNFREEVGGRFSNEGPRSSNSSAAKFGPVRNESN
YRQQRSAPYSKGPPNNESSNQGQGFRNKFAGGGKFGGSAGNEGRFGSNRF
QQRDNSGPQPGRRNFKNSPTSGYRGGGNNSDFQGGSSSSGGGGSVNQRAG
GGGPGPSHVRQDRRGFALPVEHQQQQMGFGRFGNGPMNSGNRGTNGGNPP
GGRGFFNGGGGGFNDRRDSSHETSSPQGGPSKRGGSGGRNHNQNGINAYH
SEFPPLGSGGGGPGQRNRFNGPRPGPNMGGNRRF*
BS33319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7903-PA | 384 | CG7903-PA | 1..384 | 1..384 | 2103 | 100 | Plus |
| CG7903-PB | 382 | CG7903-PB | 1..382 | 1..384 | 2081 | 99.5 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 285..574 | 76..368 | 210 | 31.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 285..563 | 76..368 | 202 | 30.5 | Plus |
| CG5787-PB | 950 | CG5787-PB | 50..378 | 76..381 | 202 | 27.5 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 259..547 | 72..382 | 185 | 28.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 234..519 | 78..380 | 170 | 30.3 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 234..530 | 78..380 | 169 | 28.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 379..598 | 70..380 | 164 | 25.2 | Plus |
