BS33332.complete Sequence
1178 bp assembled on 2014-01-24
GenBank Submission: KX806065
> BS33332.complete
GAAGTTATCAGTCGACATGGAGCGCAGTCATTTGCCGGAGACGCCATTCG
ACCTGGCCCATTCTGGGCCCAGGTTTCAGGCCCAGTCGAGTGGCAATGGT
TCCGTGCTGGACAATGTGCTGCCCGACATGGCGCACCTGGTGAACCCCTA
CTGGAGCCGCTTTGCGCCCATGGATCCCATGATGAGCAAAATTCTGGGAT
TGTTCACCCTGGCCATTATGATCATCTCGTGCTGCGGCAACGGAGTGGTG
GTCTACATTTTCGGTGGAACAAAGTCGCTGCGCACGCCGGCAAATTTGCT
CGTTCTCAACCTGGCCTTCTCCGACTTCTGTATGATGGCCTCCCAGTCGC
CGGTGATGATTATTAACTTCTACTACGAGACTTGGGTGCTGGGTCCGCTG
TGGTGCGACATCTACGCGGGATGTGGCTCGCTCTTTGGCTGTGTGTCCAT
CTGGTCCATGTGCATGATTGCCTTCGATCGGTACAATGTGATAGTGAAGG
GTATCAATGGCACACCCATGACCATCAAGACGTCTATAATGAAGATACTT
TTCATCTGGATGATGGCTGTCTTTTGGACTGTCATGCCATTGATTGGATG
GAGCGCCTATGTGCCCGAGGGCAATCTGACTGCCTGCAGCATTGACTATA
TGACGCGTATGTGGAACCCGCGATCTTATTTAATCACCTACTCCCTCTTC
GTTTACTACACTCCACTGTTTCTCATCTGCTACTCCTACTGGTTCATCAT
TGCCGCCGTGGCAGCACATGAAAAAGCGATGCGGGAACAGGCCAAGAAGA
TGAATGTGAAATCCCTGCGGAGCTCTGAGGATTGCGACAAAAGTGCCGAG
GGAAAACTGGCCAAGGTGGCTCTAACTACCATCTCCCTATGGTTTATGGC
ATGGACACCATACCTTGTCATTTGCTACTTCGGACTCTTCAAAATCGACG
GATTGACCCCACTGACGACCATTTGGGGAGCGACTTTCGCCAAAACGAGC
GCAGTCTACAATCCGATTGTGTACGGCATTAGCCATCCCAAGTACCGCAT
AGTTCTCAAGGAAAAGTGCCCTATGTGTGTGTTTGGCAATACGGATGAGC
CGAAACCGGATGCACCCGCTTCCGATACGGAAACTACGTCTGAGGCGGAT
TCAAAGGCTTAAAAGCTTTCTAGACCAT
BS33332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh2-RA | 1146 | CG16740-PA | 1..1146 | 17..1162 | 5715 | 99.9 | Plus |
| ninaE-RA | 1122 | CG4550-PA | 196..1052 | 233..1089 | 820 | 73 | Plus |
| Rh6-RB | 1156 | CG5192-PB | 378..455 | 424..501 | 180 | 82.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh2-RA | 1365 | CG16740-RA | 55..1202 | 16..1163 | 5725 | 99.9 | Plus |
| ninaE-RA | 1588 | CG4550-RA | 372..1228 | 233..1089 | 820 | 73 | Plus |
| Rh6-RB | 1474 | CG5192-RB | 516..593 | 424..501 | 180 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18899673..18900589 | 116..1032 | 4585 | 100 | Plus |
| 3R | 32079331 | 3R | 18899477..18899579 | 16..118 | 515 | 100 | Plus |
| 3R | 32079331 | 3R | 18900758..18900856 | 1065..1163 | 480 | 99 | Plus |
| 3R | 32079331 | 3R | 19886743..19886993 | 1029..779 | 460 | 78.9 | Minus |
| 3R | 32079331 | 3R | 19887504..19887772 | 501..233 | 295 | 74 | Minus |
| 3R | 32079331 | 3R | 19887077..19887222 | 753..608 | 235 | 77.4 | Minus |
| 3R | 32079331 | 3R | 18900668..18900705 | 1029..1066 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:54:50 has no hits.
BS33332.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:17 Download gff for
BS33332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh2-RA | 56..1199 | 17..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:26:32 Download gff for
BS33332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh2-RA | 56..1199 | 17..1160 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:26:32 Download gff for
BS33332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18899478..18899576 | 17..115 | 100 | -> | Plus |
| 3R | 18899673..18900589 | 116..1032 | 100 | -> | Plus |
| 3R | 18900672..18900705 | 1033..1066 | 100 | -> | Plus |
| 3R | 18900760..18900853 | 1067..1160 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:17 Download gff for
BS33332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14725200..14725298 | 17..115 | 100 | -> | Plus |
| arm_3R | 14725395..14726311 | 116..1032 | 100 | -> | Plus |
| arm_3R | 14726394..14726427 | 1033..1066 | 100 | -> | Plus |
| arm_3R | 14726482..14726575 | 1067..1160 | 98 | | Plus |
BS33332.pep Sequence
Translation from 16 to 1161
> BS33332.pep
MERSHLPETPFDLAHSGPRFQAQSSGNGSVLDNVLPDMAHLVNPYWSRFA
PMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA
FSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCM
IAFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVP
EGNLTACSIDYMTRMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAA
HEKAMREQAKKMNVKSLRSSEDCDKSAEGKLAKVALTTISLWFMAWTPYL
VICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEK
CPMCVFGNTDEPKPDAPASDTETTSEADSKA*
BS33332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh2-PA | 381 | CG16740-PA | 1..381 | 1..381 | 2053 | 100 | Plus |
| ninaE-PA | 373 | CG4550-PA | 9..373 | 14..381 | 1370 | 69.6 | Plus |
| Rh6-PB | 369 | CG5192-PB | 7..369 | 18..379 | 1000 | 52.2 | Plus |
| Rh4-PA | 378 | CG9668-PA | 13..371 | 19..376 | 630 | 39.8 | Plus |
| Rh3-PA | 383 | CG10888-PA | 1..376 | 1..376 | 609 | 38.4 | Plus |
