BS33333.complete Sequence
1061 bp assembled on 2014-01-24
GenBank Submission: KX801507
> BS33333.complete
GAAGTTATCAGTCGACATGCCGCGCAAGTTGCTTAAATTCCTTATCATCT
TCGACAACACTTCCCTCCTGTACTTCCCGGGCCAGTTTCTCTCCGGACGG
GTTCTAATCGAATTGCAGGATGAGACGCCTGCTTTGGGACTTCATTTCCA
TGTGGTAGGCGAAGGGGTCGTGCGCAACGGGCGGCGACAGGAGCGGACAT
ACGATAAGGAGAACTATATCGACTTTCGGATGCGACTTCTGGGGGACGTA
GACCAAGGAGGTCCAGCTATACTCTCGCCAGGAATTCACAGCTTCCCCTT
CAAACTCGGCTTGCCACTGGGTCTTCCATCTACATTTCTCGGTCGGTACG
GCTGGATTCAGTTCTACTGCAAGGCGGCGCTCCGCGAGAACAATGGCATT
ATCCATAAGAACCACCAGGTCTTCATTGTGATGAATCCCATCGACCTAAA
CCTTGAAAAGCCCATCTTAGCACAACCGTTCACCTGCGAAGTTGAGCACA
AGCTAGGCGTCGTCTGTGTTGGTGGAGGTCAGATAAAGTGCAGAGTGTCC
CTTGATCGCGGTGGGTATGTGCCCGGCGAGAATATTCTGGTCACCGCATT
TATATCCAACTACAGTAATGTGTCCATTAAACGGACTAAGGCATCCCTCA
CTGAGACCATCGAGTATTTGGCGCGGGGGAAGGTGGTGCAAACGGAAAAA
CGGGAGCTGGCTGTTTTAGTTCGTGGCAAGATCCGTCCGGGGGCCAAAGA
CGAGTGGCACAACGAGCTTTACGTTCCACCCCTGCCGCCGACCAATCTTC
ATGGCTGCCACCTGATCAAAATATCCTACGACGTCTTCTTCGTGATCGAA
CCCAAGTCCATGGAGAAGGAGATTAAGCTACAGCTTCCTATCGTGCTTGC
GACGTACCCCTTTCGACACTCCGGTGATGCGGTCAATGCCAACACCTGGC
CGGAATCGGTGCTTAAGCCGGACACGCACACCCACTATCCGTCCACACTA
CCCATATTCCGGCCCTGGCTGCACGAGAAGCCTATCGAGGCATAGAAGCT
TTCTAGACCAT
BS33333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vdup1-RE | 1029 | CG7047-PE | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| Vdup1-RD | 1029 | CG7047-PD | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| Vdup1-RA | 1029 | CG7047-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vdup1-RE | 1384 | CG7047-RE | 168..1196 | 17..1045 | 5145 | 100 | Plus |
| Vdup1-RD | 2020 | CG7047-RD | 608..1636 | 17..1045 | 5145 | 100 | Plus |
| Vdup1-RA | 1676 | CG7047-RA | 460..1488 | 17..1045 | 5145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 177382..177837 | 472..17 | 2280 | 100 | Minus |
| 3L | 28110227 | 3L | 176690..177081 | 1045..654 | 1960 | 100 | Minus |
| 3L | 28110227 | 3L | 177146..177328 | 655..473 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:54:54 has no hits.
BS33333.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:19 Download gff for
BS33333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vdup1-RA | 460..1488 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:26:34 Download gff for
BS33333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vdup1-RA | 460..1488 | 17..1045 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:26:34 Download gff for
BS33333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 176690..177079 | 656..1045 | 100 | <- | Minus |
| 3L | 177146..177328 | 473..655 | 100 | <- | Minus |
| 3L | 177382..177837 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:19 Download gff for
BS33333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 176690..177079 | 656..1045 | 100 | <- | Minus |
| arm_3L | 177146..177328 | 473..655 | 100 | <- | Minus |
| arm_3L | 177382..177837 | 17..472 | 100 | | Minus |
BS33333.pep Sequence
Translation from 16 to 1044
> BS33333.pep
MPRKLLKFLIIFDNTSLLYFPGQFLSGRVLIELQDETPALGLHFHVVGEG
VVRNGRRQERTYDKENYIDFRMRLLGDVDQGGPAILSPGIHSFPFKLGLP
LGLPSTFLGRYGWIQFYCKAALRENNGIIHKNHQVFIVMNPIDLNLEKPI
LAQPFTCEVEHKLGVVCVGGGQIKCRVSLDRGGYVPGENILVTAFISNYS
NVSIKRTKASLTETIEYLARGKVVQTEKRELAVLVRGKIRPGAKDEWHNE
LYVPPLPPTNLHGCHLIKISYDVFFVIEPKSMEKEIKLQLPIVLATYPFR
HSGDAVNANTWPESVLKPDTHTHYPSTLPIFRPWLHEKPIEA*
BS33333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vdup1-PE | 342 | CG7047-PE | 1..342 | 1..342 | 1821 | 100 | Plus |
| Vdup1-PD | 342 | CG7047-PD | 1..342 | 1..342 | 1821 | 100 | Plus |
| Vdup1-PA | 342 | CG7047-PA | 1..342 | 1..342 | 1821 | 100 | Plus |
| Vdup1-PC | 342 | CG7047-PC | 1..342 | 1..342 | 1821 | 100 | Plus |
| Vdup1-PB | 342 | CG7047-PB | 1..342 | 1..342 | 1821 | 100 | Plus |
