BS33335.complete Sequence
1751 bp assembled on 2014-07-17
GenBank Submission: KX801491
> BS33335.complete
GAAGTTATCAGTCGACATGTTCAGGAGCAAAAATGAGGGGAACATTGTGT
ACAAATGCACTGTGCGACTCCTCGATGACTCCGATGTCCTAGAGTGTGAA
TTTCAGCCCTTCCATAAGGGAATATACCTATTGGAGTACTTGTGCGGTGA
GTTGGAGATCAAGGAGAAGGATTACTTCGGTTTGCGATATGTTGACTCCT
CCAAACAGAGGCACTGGCTCGACCTGTCAAAATCAATTATTAAGCAATGC
AAAGAAATGGATCCACTATTGTTTTCGCTGAGAGTAAAGTTCTACCCTGC
GGATCCATTTCGACTGACCGGAAATGCACGGATTATGCTCTATCAGCAGT
TAAAGAGGGACCTTCGACATGGTCGCTTGTACTGCTCCTTGGGCGAGGCG
GCTGCACTGGGCGCTCTAATAGTTCAAGAGGAGCTGGGCGACTATAACGA
AGACGTGCATGTGGGCAGTTACGTATCTTCCATAGAATTAGCACTGCGGC
AGACGGAGTGTCTGGAGAAGAAGATAATCGAGCTGCATAAGAAGCGAGAG
CCCGGACAGAATCTCTCCCTGGCCATGGATGAGTTCCTGGGCATAGCTCG
CGGCCTGGAGACTTACGGCATAGATCCGCATCCGGTCAAGGATCACCGCG
GATCGCAGCAGTACGTCGGCATAAATAATACGGGCATTAGCACATTTGTG
GCCGGCAAAAGATCTCAACATTTTCGCTGGAACGAAATACACAAAATCAA
TTTCGAGGGCAAAATGTTTATAGCGCATCTCAGCTATACGGACGCTAGTC
GTGAACCAAAAAAACATACTGTTGGCTTCAAGTGTCCAACTGGCGCAGCT
TGTCGATACTTGTGGCGATGTGCCATTGAACAAATGCTGTTCTTTACATT
ACCCAATAGCCAAAGTGCAGCTGTGATTTCGGGCGGAGGCTTCTTCTCCT
GGGGCACCAAATTCCGATACACCGGAAGAACTGAGCGTGAAATTTTGACT
GAAAACATAAATGCGTTGCGGGAACAAAAGAATAACTCGAACTCGAGCAA
GCGAAAGGCGAGCAGTGTGCCAGCCACGCCGTCCAGTCCACAAGGGGATT
TAGCACAAATAAGATATAGCAGCTTGCCGAGATCCACGATGTCGGAGCCT
TTGGGCTACGGCATGCCAAATGGCCATTTCTATGGGCACGACCATGGGAT
GAGCGATGCAAATGGGGGCATCCAAATCTCCAGCCTGGAGCCAGTCTGCG
AGGAGGCACGCCTGCGATCGTCGAACATAGATGGGGTCAACTATTTGGCC
AGCCAGATCGGTGGCTATGCCTATCGGGACTCCGTCGAGCATTCTTCCAC
TGAGAGCGGCCTGACCGTAAATGGTTACGATCATCCGAGGAAACACAATG
AGGCCAGACAGCACGGCTCCTACTCGCCCAATCTGTACTACGGACAATCG
GATGGCGCCGTGAACTCCAGTTCGCCAGCCGATAGCTTCCTGCACGCGGA
TCCATCCACGCGAAAGGTTAAGAAGTTCCGCAAATTCCACCTACTGCACG
CCTTCGTTCCGTCCGTGATTTTTGTTGCTTTCGCGATGGCCGGAACGGCT
GTGTTCATCATGGAATCCGAATCGGAGGCCTTCGAGCAGCTGCGCAACTC
ACCCGAAATGCTTTGTCTGCGCTATCAGTACTATCAGCCACTGAAGGAGT
TCGTTCTGGAGAAGTTGGGTCGAAGTGGGAAGTAGAAGCTTTCTAGACCA
T
BS33335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5022-RA | 1719 | CG5022-PA | 1..1719 | 17..1735 | 8565 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5022-RA | 2086 | CG5022-RA | 213..1937 | 17..1741 | 8580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10346929..10347557 | 1113..1741 | 3130 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10345985..10346366 | 427..808 | 1895 | 99.7 | Plus |
| 2L | 23513712 | 2L | 10346573..10346788 | 898..1113 | 1080 | 100 | Plus |
| 2L | 23513712 | 2L | 10345747..10345922 | 253..428 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 10345468..10345575 | 104..211 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 10344654..10344743 | 17..106 | 450 | 100 | Plus |
| 2L | 23513712 | 2L | 10346423..10346511 | 809..897 | 445 | 100 | Plus |
| 2L | 23513712 | 2L | 10345646..10345689 | 211..254 | 205 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:13:46 has no hits.
BS33335.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:33 Download gff for
BS33335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5022-RA | 218..1931 | 22..1735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:34:13 Download gff for
BS33335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5022-RA | 218..1931 | 22..1735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:34:13 Download gff for
BS33335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10345749..10345922 | 255..428 | 100 | -> | Plus |
| 2L | 10344659..10344743 | 22..106 | 100 | -> | Plus |
| 2L | 10345471..10345575 | 107..211 | 100 | -> | Plus |
| 2L | 10345647..10345689 | 212..254 | 97 | -> | Plus |
| 2L | 10345987..10346366 | 429..808 | 99 | -> | Plus |
| 2L | 10346423..10346511 | 809..897 | 100 | -> | Plus |
| 2L | 10346573..10346787 | 898..1112 | 100 | -> | Plus |
| 2L | 10346929..10347551 | 1113..1735 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:33 Download gff for
BS33335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10345749..10345922 | 255..428 | 100 | -> | Plus |
| arm_2L | 10344659..10344743 | 22..106 | 100 | -> | Plus |
| arm_2L | 10345471..10345575 | 107..211 | 100 | -> | Plus |
| arm_2L | 10345647..10345689 | 212..254 | 97 | -> | Plus |
| arm_2L | 10345987..10346366 | 429..808 | 99 | -> | Plus |
| arm_2L | 10346423..10346511 | 809..897 | 100 | -> | Plus |
| arm_2L | 10346573..10346787 | 898..1112 | 100 | -> | Plus |
| arm_2L | 10346929..10347551 | 1113..1735 | 100 | | Plus |
BS33335.pep Sequence
Translation from 16 to 1734
> BS33335.pep
MFRSKNEGNIVYKCTVRLLDDSDVLECEFQPFHKGIYLLEYLCGELEIKE
KDYFGLRYVDSSKQRHWLDLSKSIIKQCKEMDPLLFSLRVKFYPADPFRL
TGNARIMLYQQLKRDLRHGRLYCSLGEAAALGALIVQEELGDYNEDVHVG
SYVSSIELALRQTECLEKKIIELHKKREPGQNLSLAMDEFLGIARGLETY
GIDPHPVKDHRGSQQYVGINNTGISTFVAGKRSQHFRWNEIHKINFEGKM
FIAHLSYTDASREPKKHTVGFKCPTGAACRYLWRCAIEQMLFFTLPNSQS
AAVISGGGFFSWGTKFRYTGRTEREILTENINALREQKNNSNSSKRKASS
VPATPSSPQGDLAQIRYSSLPRSTMSEPLGYGMPNGHFYGHDHGMSDANG
GIQISSLEPVCEEARLRSSNIDGVNYLASQIGGYAYRDSVEHSSTESGLT
VNGYDHPRKHNEARQHGSYSPNLYYGQSDGAVNSSSPADSFLHADPSTRK
VKKFRKFHLLHAFVPSVIFVAFAMAGTAVFIMESESEAFEQLRNSPEMLC
LRYQYYQPLKEFVLEKLGRSGK*
BS33335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5022-PA | 572 | CG5022-PA | 1..572 | 1..572 | 3019 | 100 | Plus |
| yrt-PC | 786 | CG9764-PC | 60..392 | 14..349 | 485 | 36.5 | Plus |
| yrt-PD | 919 | CG9764-PD | 60..392 | 14..349 | 485 | 36.5 | Plus |
| yrt-PB | 932 | CG9764-PB | 60..392 | 14..349 | 485 | 36.5 | Plus |
| yrt-PA | 972 | CG9764-PA | 60..392 | 14..349 | 485 | 36.5 | Plus |
