BS33336.complete Sequence
1034 bp assembled on 2014-01-24
GenBank Submission: KX805328
> BS33336.complete
GAAGTTATCAGTCGACATGGGTAAAGATCGACTGCCCGAGCTTTTGCAGC
GCTCATTGAGCACGAACTCGTCGAACTCGTCGTCGAACGGTTCACTGCTT
TTGAACGTGTACAGTGGAACCACGGAGTTCATCATTGGCAACACCGGCGG
TAACAATAATAGCTACAGTGTCGTTAGCCAAAACTCTCACAGCTGCAGCA
ACAATAACAGCAGCACCGAACCCAAGGATCGGTCCAGTTCAAAGATGACG
CAGTATGGCTCGAATGTGGATGACATACTCAATCCGTACACGGAGATTCG
CCAACAACTCGCACAGATAGCCGCCAACTTGGAGACGATGAACCGCATGG
CCCAAACTGTCAATCTGCGAACTTTCAACGAGAACGAGATGGATGAGCTT
CACAACAAAAACCTGAGGCTGGGCAATCAGCTAATGACGCGATTCAACGA
CTTCAAGGCGAATCTGCCGGCGGAAAACGATTACAGCTTGGAGGCAAGGA
TGAAAAGAACCCTTTTCTATGGACTCCACCAGACTTTCATCAATCTGTGG
CACAAAAACGAACTATTCCTGCAGAACTACGAGACCAAGGTCAAAAAGAA
TCTGAGACTGCATACAAAAATCATTAATTCTGAAGCCAGCGAACAAGAAA
TCGAGTTACTCATCGAGAACAAGACAACCAAACTCTTTGTGGATAATTTT
CTGCAGGAAACGGAAAAGGAGCGGCAGACACTGCGCGAAATGATGGATCG
ATTCAACGAGCTGCGCCGCCTGGAGAAGTCCATCGAGGAGGTGCACGCCC
TGTTCATGCGCATCCAGACCCTGGTAATGGAGCAGAGCGAGGTGATCCAG
CGGGTGGAGTTTCACGCCCAGCAGGCCACGCTCCACGTGGACAAGGGCGC
CGACGAGCTGGACCAGGCGGAGCAGCACCAGAAGAAGGCGCGCAAGAAAA
AGATAATGCTCATCGTGATACTCGCAGCCGTGTTGCTAGTATTACTCCTT
GTTGGTATTTATTTGTGAAAGCTTTCTAGACCAT
BS33336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx4-RA | 1002 | CG2715-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
| Syx4-RB | 774 | CG2715-PB | 1..774 | 245..1018 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx4-RA | 1667 | CG2715-RA | 594..1595 | 17..1018 | 5010 | 100 | Plus |
| Syx4-RB | 1083 | CG2715-RB | 43..1011 | 50..1018 | 4845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2739297..2739545 | 946..698 | 1245 | 100 | Minus |
| X | 23542271 | X | 2741585..2741832 | 627..380 | 1225 | 99.6 | Minus |
| X | 23542271 | X | 2742561..2742800 | 286..47 | 1200 | 100 | Minus |
| X | 23542271 | X | 2741898..2741992 | 380..286 | 475 | 100 | Minus |
| X | 23542271 | X | 2739161..2739234 | 1018..945 | 370 | 100 | Minus |
| X | 23542271 | X | 2741423..2741496 | 697..624 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:54:31 has no hits.
BS33336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:10 Download gff for
BS33336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx4-RA | 594..1594 | 17..1017 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:26:23 Download gff for
BS33336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx4-RA | 594..1594 | 17..1017 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:26:23 Download gff for
BS33336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2739162..2739232 | 947..1017 | 100 | <- | Minus |
| X | 2739297..2739545 | 698..946 | 100 | <- | Minus |
| X | 2741423..2741496 | 624..697 | 100 | <- | Minus |
| X | 2741589..2741831 | 381..623 | 100 | <- | Minus |
| X | 2741898..2741991 | 287..380 | 100 | <- | Minus |
| X | 2742561..2742797 | 50..286 | 100 | <- | Minus |
| X | 2743451..2743483 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:10 Download gff for
BS33336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2633195..2633265 | 947..1017 | 100 | <- | Minus |
| arm_X | 2633330..2633578 | 698..946 | 100 | <- | Minus |
| arm_X | 2635456..2635529 | 624..697 | 100 | <- | Minus |
| arm_X | 2635622..2635864 | 381..623 | 100 | <- | Minus |
| arm_X | 2635931..2636024 | 287..380 | 100 | <- | Minus |
| arm_X | 2636594..2636830 | 50..286 | 100 | <- | Minus |
| arm_X | 2637484..2637516 | 17..49 | 100 | | Minus |
BS33336.pep Sequence
Translation from 16 to 1017
> BS33336.pep
MGKDRLPELLQRSLSTNSSNSSSNGSLLLNVYSGTTEFIIGNTGGNNNSY
SVVSQNSHSCSNNNSSTEPKDRSSSKMTQYGSNVDDILNPYTEIRQQLAQ
IAANLETMNRMAQTVNLRTFNENEMDELHNKNLRLGNQLMTRFNDFKANL
PAENDYSLEARMKRTLFYGLHQTFINLWHKNELFLQNYETKVKKNLRLHT
KIINSEASEQEIELLIENKTTKLFVDNFLQETEKERQTLREMMDRFNELR
RLEKSIEEVHALFMRIQTLVMEQSEVIQRVEFHAQQATLHVDKGADELDQ
AEQHQKKARKKKIMLIVILAAVLLVLLLVGIYL*
BS33336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx4-PA | 333 | CG2715-PA | 1..333 | 1..333 | 1676 | 100 | Plus |
| Syx4-PB | 257 | CG2715-PB | 1..257 | 77..333 | 1292 | 100 | Plus |
| Syx1A-PA | 291 | CG31136-PA | 14..278 | 65..322 | 267 | 23.4 | Plus |
| Syx1A-PB | 296 | CG31136-PB | 14..278 | 65..322 | 267 | 23.4 | Plus |
| Syx7-PB | 282 | CG5081-PB | 24..278 | 96..332 | 175 | 25 | Plus |
