BS33337.complete Sequence
2033 bp assembled on 2014-03-06
GenBank Submission: KX801257
> BS33337.complete
GAAGTTATCAGTCGACATGTCGGATTCAGATAGCAAGCGGATCGATGTGG
AGGCCCCGGAGCGAGTGGAGCAGCACGAATTGCAGGTGATGCCGGTGGGC
AGCACCATTGAGGTGCCCAGCTTGGACAGCACACCCAAGCTATCGAAACG
GAACAGTTCGGAGAGAAGTCTACCGCTCAGGAGCTACAGCAAATGGTCGC
CCACGGAGCAGGGAGCCACTCTGGTGTGGCGGGATCTCTGCGTCTATACC
AATGTCGGTGGTTCCGGTCAGCGGATGAAGCGGATCATCAACAACTCAAC
GGGGGCCATTCAACCGGGCACTCTGATGGCTCTAATGGGCTCGAGTGGCT
CTGGGAAAACAACACTCATGTCAACGCTCGCCTTTCGACAGCCGGCCGGG
ACCGTCGTTCAAGGCGACATTCTGATAAACGGCCGGCGCATTGGGCCCTT
CATGCATCGCATCAGCGGCTACGTCTACCAGGATGACCTCTTCCTCGGAT
CGCTGACTGTTCTCGAGCACTTGAACTTTATGGCACATCTCCGCCTGGAT
CGTCGGGTGTCGAAAGAGGAGCGTCGCCTCATCATTAAAGAGCTGCTGGA
GCGAACCGGCCTTCTTTCGGCGGCGCAAACTCGAATTGGTAGTGGCGATG
ACAAGAAGGTCCTTTCGGGGGGAGAACGCAAACGATTGGCATTCGCCGTG
GAGCTGCTGAACAATCCGGTGATTCTATTTTGCGATGAGCCTACCACGGG
ACTGGACTCATACAGTGCCCAGCAGCTGGTGGCCACGTTGTACGAGTTGG
CCCAAAAGGGCACCACCATACTGTGCACCATCCATCAGCCGAGTTCGCAG
CTCTTCGATAACTTTAACAACGTAATGTTGCTGGCCGATGGGCGAGTAGC
CTTTACGGGATCACCTCAGCATGCGCTTAGTTTCTTTGCGAATCATGGAT
ACTACTGCCCGGAGGCCTACAATCCGGCAGATTTCCTAATTGGTGTCCTG
GCGACCGATCCTGGCTATGAGCAGGCCTCGCAGAGATCGGCTCAACACCT
TTGTGATCAGTTTGCCGTCAGCTCGGCGGCCAAGCAGCGGGATATGCTGG
TTAATCTGGAGATTCACATGGCCCAGTCAGGCAACTTTCCCTTCGACACG
GAGGTGGAGTCCTTCAGGGGCGTGGCGTGGTACAAGCGCTTCCACGTAGT
GTGGCTAAGGGCATCGCTGACGCTGCTAAGGGATCCCACGATTCAATGGT
TGCGGTTCATTCAAAAGATCGCAATGGCATTTATTATCGGTGCCTGTTTT
GCCGGAACCACGGAACCCTCCCAGTTGGGCGTACAGGCTGTTCAGGGAGC
ACTTTTCATCATGATATCGGAGAACACCTACCATCCCATGTACTCCGTGC
TGAATCTCTTCCCGCAGGGATTTCCTCTGTTCATGCGGGAAACCCGATCC
GGACTCTACTCCACGGGACAATATTATGCGGCCAATATACTGGCTTTGCT
GCCTGGCATGATAATTGAGCCCCTGATATTCGTCATAATCTGCTACTGGC
TGACGGGTCTGAGATCCACCTTTTATGCCTTCGGAGTGACTGCCATGTGT
GTGGTGCTGGTGATGAATGTGGCCACAGCCTGCGGTTGCTTCTTTTCCAC
GGCCTTTAATTCGGTGCCGCTGGCAATGGCTTACTTGGTGCCCTTGGATT
ATATATTCATGATCACCTCGGGAATCTTTATACAAGTGAATTCGCTACCA
GTGGCGTTTTGGTGGACACAATTTCTCTCATGGATGCTGTATGCCAATGA
GGCAATGACCGCTGCTCAATGGTCTGGAGTGCAGAATATAACCTGCTTTC
AGGAGAGTGCCGACTTGCCGTGCTTTCACACGGGTCAGGATGTCCTGGAC
AAGTACAGCTTCAACGAGAGCAATGTCTATCGGAATTTACTGGCCATGGT
GGGTCTTTATTTCGGATTCCATTTACTGGGATATTATTGCCTTTGGCGAA
GGGCGCGGAAGCTGTAAAAGCTTTCTAGACCAT
BS33337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| st-RA | 2001 | CG4314-PA | 1..2001 | 17..2017 | 10005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| st-RA | 2146 | CG4314-RA | 89..2090 | 17..2018 | 10010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16498725..16499691 | 532..1498 | 4835 | 100 | Plus |
| 3L | 28110227 | 3L | 16497739..16498067 | 17..345 | 1645 | 100 | Plus |
| 3L | 28110227 | 3L | 16499768..16500010 | 1498..1740 | 1215 | 100 | Plus |
| 3L | 28110227 | 3L | 16500228..16500404 | 1842..2018 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 16498403..16498541 | 395..533 | 695 | 100 | Plus |
| 3L | 28110227 | 3L | 16500070..16500170 | 1741..1841 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 16498244..16498295 | 344..395 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:08:18 has no hits.
BS33337.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-06 11:10:24 Download gff for
BS33337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| st-RA | 89..2087 | 17..2015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:12 Download gff for
BS33337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| st-RA | 89..2087 | 17..2015 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:12 Download gff for
BS33337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16497739..16498067 | 17..345 | 100 | -> | Plus |
| 3L | 16498246..16498295 | 346..395 | 100 | -> | Plus |
| 3L | 16498404..16498540 | 396..532 | 100 | -> | Plus |
| 3L | 16498726..16499691 | 533..1498 | 100 | -> | Plus |
| 3L | 16499769..16500010 | 1499..1740 | 100 | -> | Plus |
| 3L | 16500070..16500170 | 1741..1841 | 100 | -> | Plus |
| 3L | 16500228..16500401 | 1842..2015 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-06 11:10:24 Download gff for
BS33337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16490839..16491167 | 17..345 | 100 | -> | Plus |
| arm_3L | 16491346..16491395 | 346..395 | 100 | -> | Plus |
| arm_3L | 16491504..16491640 | 396..532 | 100 | -> | Plus |
| arm_3L | 16491826..16492791 | 533..1498 | 100 | -> | Plus |
| arm_3L | 16492869..16493110 | 1499..1740 | 100 | -> | Plus |
| arm_3L | 16493170..16493270 | 1741..1841 | 100 | -> | Plus |
| arm_3L | 16493328..16493501 | 1842..2015 | 100 | | Plus |
BS33337.pep Sequence
Translation from 16 to 2016
> BS33337.pep
MSDSDSKRIDVEAPERVEQHELQVMPVGSTIEVPSLDSTPKLSKRNSSER
SLPLRSYSKWSPTEQGATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQP
GTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHRIS
GYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLL
SAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYS
AQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSP
QHALSFFANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFA
VSSAAKQRDMLVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRAS
LTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMI
SENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMII
EPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSV
PLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAA
QWSGVQNITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGLYFG
FHLLGYYCLWRRARKL*
BS33337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| st-PA | 666 | CG4314-PA | 1..666 | 1..666 | 3472 | 100 | Plus |
| w-PA | 687 | CG2759-PA | 110..685 | 88..665 | 1021 | 38.5 | Plus |
| CG9664-PD | 608 | CG9664-PD | 42..596 | 90..657 | 583 | 29.7 | Plus |
| CG9664-PA | 609 | CG9664-PA | 42..597 | 90..657 | 578 | 29.5 | Plus |
| CG9664-PB | 609 | CG9664-PB | 42..597 | 90..657 | 578 | 29.5 | Plus |
