BS33343.complete Sequence
1505 bp assembled on 2014-01-24
GenBank Submission: KX804318
> BS33343.complete
GAAGTTATCAGTCGACATGAGGCTGCCATCGATGGTGGATAACGTGTGGA
AGCGTTTCATGGCCATGTTGTCACTTCCGGATTTGTTGGTCCTCGGCTGT
CTGTGGGCCAGTGGCTTCTCCTTGGGTTACTACGCCAAGTCGGCTTATGT
GTACGACAACCTGTGGCCTCACTGGTACGCCCTGGTGGGCGGGTTGGTGG
CCTTGGCTCTAACCCTGGGCTGGACCCTCAGAAAGCACAAGAAACAGCAG
TACAGCTACGATCACTACTATATTATTTTCTATGGGCTTCTCTGCTCGTT
GATGGGGAGCTGCTTCATGCTGACTAGACAGCTGGCTGTTAGTTATTACT
TCAGCTTCGTGGGATTGAGTGTGCAGTACTTGGCCGGATTTAGTTACGTG
AGCCTGCGTTGTGATGCCTCAGGATCACGACCGTCCAGAATCGCTTTGGC
CAACTCACTGTATGCCGGAGGAATGGCCACAGGATTTGTGATTTTCAACG
AGATGGAACCGCAGCGTAGCGGATTGATTGCTCTGGGAATTAATCTGCTC
TTACTCTGCCTGGTTTGTCTAAACGAGCTGCTGCACCATACTGGCTGCAT
TAACTACAAAGAATCAAGGGATTTGGTGTTTAATCTACTCAACGAGGAGA
AGATGGTCTTTCTGCCGCGCCAGGCGATTTTGGCGCAGTTTGTGGACAGA
ACGGATTACGAACTGAAGGAAAGCCGGCAGTGGCTGGTGCTGATCCTGGG
AGGATCGCTGGTGTGCCTCCAGAAGAGCTGCCTTCTCTTCTCACCCACCT
ACATGCAGCTAACGTGGAGCAGCACGGTGGGCTATTTGCAGCAAACCCAG
CTCTATATACCCTTTGTCCTGTACTCGGCTGGCACCAGTTTTGGAGCACT
GCTCCTGATGAGATACACCCCCAAGTTGGTGTACCTACTCTTCGGACTTA
TTCAGATAACTTCGATTGTGGCTCTGCTGTGCATCTACAGCGATGAGCAG
TCGGAACACTGTTTCCTGTTCCTCTGCCTCATATACATCACAATGGGTGT
GCTTTCGAGCCAGGGAATCCACTGGCTCCTGGAGTGCTCACCCTTTCTCC
ACACAGAGTTGGCCCTGGCCGCAGGATTCATTCTGCAACTGTGCGTTATG
GAGGGCTCCAAATACGAGTCCTACGCCACGGACACATGGATTGCCCTGAT
AATAGTGAGTGTAATCACTCAGGGACTCACTGCCCTGGCCATTCCTGTGG
TGCAGTGGCTCCAGCCGCACTCCGCCAGCCTTGTCGATGTACGCAACCGC
CTGCTGGGCATCCGACGGAAGTCGCTGCCCCCGGAGCAGACCCAGTTCTG
GCACACCAACCACTTTCTGGCCCACAACAAGCCCGCCAACCAGCTGGAAT
CCGTGCAGCTGGGCAGGAGCAGGGTCTTTCAGCAGTATCCGATCAGCGGG
AGTGACACCGCGGAGAACCACAAAGGCGACAAGTTCTGAAAGCTTTCTAG
ACCAT
BS33343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13810-RB | 1473 | CG13810-PB | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13810-RB | 1552 | CG13810-RB | 53..1525 | 17..1489 | 7365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2186495..2187649 | 335..1489 | 5775 | 100 | Plus |
| 3L | 28110227 | 3L | 2186122..2186368 | 89..335 | 1235 | 100 | Plus |
| 3L | 28110227 | 3L | 2185982..2186054 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:54:57 has no hits.
BS33343.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:20 Download gff for
BS33343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13810-RB | 53..1524 | 17..1488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:26:35 Download gff for
BS33343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13810-RB | 53..1524 | 17..1488 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:26:35 Download gff for
BS33343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2185982..2186054 | 17..89 | 100 | -> | Plus |
| 3L | 2186123..2186368 | 90..335 | 100 | -> | Plus |
| 3L | 2186496..2187648 | 336..1488 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:20 Download gff for
BS33343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2185982..2186054 | 17..89 | 100 | -> | Plus |
| arm_3L | 2186123..2186368 | 90..335 | 100 | -> | Plus |
| arm_3L | 2186496..2187648 | 336..1488 | 100 | | Plus |
BS33343.pep Sequence
Translation from 16 to 1488
> BS33343.pep
MRLPSMVDNVWKRFMAMLSLPDLLVLGCLWASGFSLGYYAKSAYVYDNLW
PHWYALVGGLVALALTLGWTLRKHKKQQYSYDHYYIIFYGLLCSLMGSCF
MLTRQLAVSYYFSFVGLSVQYLAGFSYVSLRCDASGSRPSRIALANSLYA
GGMATGFVIFNEMEPQRSGLIALGINLLLLCLVCLNELLHHTGCINYKES
RDLVFNLLNEEKMVFLPRQAILAQFVDRTDYELKESRQWLVLILGGSLVC
LQKSCLLFSPTYMQLTWSSTVGYLQQTQLYIPFVLYSAGTSFGALLLMRY
TPKLVYLLFGLIQITSIVALLCIYSDEQSEHCFLFLCLIYITMGVLSSQG
IHWLLECSPFLHTELALAAGFILQLCVMEGSKYESYATDTWIALIIVSVI
TQGLTALAIPVVQWLQPHSASLVDVRNRLLGIRRKSLPPEQTQFWHTNHF
LAHNKPANQLESVQLGRSRVFQQYPISGSDTAENHKGDKF*
BS33343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13810-PB | 490 | CG13810-PB | 1..490 | 1..490 | 2569 | 100 | Plus |
