Clone BS33354 Report

Search the DGRC for BS33354

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:333
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG9257-RA
Protein status:BS33354.pep: gold
Sequenced Size:1076

Clone Sequence Records

BS33354.complete Sequence

1076 bp assembled on 2014-07-18

GenBank Submission: KX804726

> BS33354.complete
GAAGTTATCAGTCGACATGCAGCAAGGCGAACTCCGGCGCAAAAAAACAA
CAACAATTGCTGACATGTGCAACGTAGCATGCAAAACGGGGATTTTCCGG
AACTACTTGCGGGCAAGTGGCCAAAGGACCTGGATGTCGGTGCTCCTGGT
GCTCGTCCTTATGGGTACCTTCACAGCCGCGGAACCCCTGAAAGTTATAT
ACGCGGTCAACGCTGGCGGAGATGAGCACACCGATCTTAACGGGGTCCAA
TACGATGCGGATCCTCTCAAAGGAGTTGGAATAGCTTCGGACTACGGCAA
ACACCTGCTGATGATCGGCCGGGTACAGGAACATGACGAGGTGCTCTACA
GGACCGAGCGGTATCACACCACTACATTTGGGTACGATTTACCAAGCGAT
GGCGATGGAGATTACGCCTTGATAATGAAGTTCTGTGAGGTATACTTTGA
TGCGCCGCAGAAGAAGGTTTTCGATGTGCTCCTAAACCGCAAGCACACGG
TTGTCCGCCAGCTGGACATCTACAACGAGGTGGGCAGGGGCTCGGCACAC
GACGAGATTGTGTACTTTAAGATCAACAACGGACGATTAAACTATGAAGG
CGAGGTGTCCGATGTGCGAAATGGCCGCCTCCGGCTGGACTTTATAAAGG
GGGCACTGGATAATCCCAAGATCAATGCATTCGCCCTGCTCAAGGGAGAT
ATCTCCCAGGTGCCACGAATGCATGGTACCGAGGCGACTGAGAGGATTAA
ACCGGAGGGTAAGCTGAACGCGGAACAGAAGAAAGCTCAGCAGGTAGAGA
GGGTGGTGCGCAACCAGCGGGACGACATTGATGAGGATGACGAGGACCTG
GACGACGAAGAGTTTGAAGAGGAGCTTTCCGAGCAGAATGTCGACAAGCT
GGGCAGCGATCAGCCGTCGCTGCAATCGGACACAAAGCGGTCTTACAGTG
GCCCCCGCCAACCGAATCCATACTCCATGGACGACTCATCGATCTTGCTA
CCAGTTTTCATCGCCATCGGGGCCTTTATACCACTGCTGTTCTGCCTCTG
CAAGCTGTGAAAGCTTTCTAGACCAT

BS33354.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9257-RA 1044 CG9257-PA 1..1044 17..1060 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9257-RA 1579 CG9257-RA 141..1184 17..1060 5220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21102883..21103926 17..1060 5220 100 Plus
Blast to na_te.dros performed 2014-11-28 15:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 820..947 772..900 110 56.9 Plus
Rt1c 5443 Rt1c RT1C 5443bp 1401..1438 637..600 109 76.3 Minus

BS33354.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-18 11:09:23 Download gff for BS33354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9257-RA 141..1183 17..1059 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:34:22 Download gff for BS33354.complete
Subject Subject Range Query Range Percent Splice Strand
CG9257-RA 141..1183 17..1059 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:34:22 Download gff for BS33354.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21102883..21103925 17..1059 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-18 11:09:23 Download gff for BS33354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21102883..21103925 17..1059 100   Plus

BS33354.pep Sequence

Translation from 16 to 1059

> BS33354.pep
MQQGELRRKKTTTIADMCNVACKTGIFRNYLRASGQRTWMSVLLVLVLMG
TFTAAEPLKVIYAVNAGGDEHTDLNGVQYDADPLKGVGIASDYGKHLLMI
GRVQEHDEVLYRTERYHTTTFGYDLPSDGDGDYALIMKFCEVYFDAPQKK
VFDVLLNRKHTVVRQLDIYNEVGRGSAHDEIVYFKINNGRLNYEGEVSDV
RNGRLRLDFIKGALDNPKINAFALLKGDISQVPRMHGTEATERIKPEGKL
NAEQKKAQQVERVVRNQRDDIDEDDEDLDDEEFEEELSEQNVDKLGSDQP
SLQSDTKRSYSGPRQPNPYSMDDSSILLPVFIAIGAFIPLLFCLCKL*

BS33354.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9257-PA 347 CG9257-PA 1..347 1..347 1810 100 Plus