BS33359.complete Sequence
2585 bp assembled on 2014-03-03
GenBank Submission: KX806322
> BS33359.complete
GAAGTTATCAGTCGACATGCTTAAGCTACCAAAAGGCCTAAAAAAGAAAA
AGAAGAAGTCGAAAAAGGATCAGGAGCTCTTCACCGAGGAGGAGCTCGAG
CAGTACAAGCGCGACCTAAAGGCCAAACAGGAGGCGGCGGCCACAAAATC
GGACGCCGGCGAATCCGACGGAGCGTCATCAGACGTTGAGGCCCACCACG
AGCCAGTAGCCTTTAACTCAGGATTAGGCTCGGGATCATCCTCTAGCATC
CTCAACGCCCAACAACAGTTATCGGATCAAAATCAGGGGGCTGCCGGCGG
CGACGAGGAGTGGGCCAAATTTAAGGCACTAACATCAGGCGTCGATAGCA
TTCTACATAAAACCCAGGACGAGCTCGATCGGATCAAGAAGGAGTCATTT
TACCAGCGCCTGCCCTCTGCCGCTGAAAAAAAGAAACAAAAGGAGGAGGA
GGCCGCTCGCCTTGAAGCCGAGCAGCAGGAGCGGGAAAAACAGCGCCTTG
GGCAGATCGAGGCCCAACGGGACAAGTTAGCTGAGGCGGTTGTTCAGTTA
TCTGAATCAGAGGAGGAGGCAGGCGATTACGAGGCCGATGACATCTTTGC
CACCGACTACATTGAGGCTATCACCAGTGGCGAGCTCCAACTAGCCGTTG
TACCAGATTCCCCCGTCCTTGCCGAAGACGGACCCGATCCCTTTGACACC
GCATACGCGGAGAAGGTTATTGTTGGTGCCGATCGAGCAAAGGGCAACAA
GAAACTAGTGAGTCTTGGTGCAGCCGTTGAGGTTTTATCCGGTCGCGTGG
ACCGAGAGCACGCTGTCGCCCTAGCGAATCCCAAGCGGAAGTTAAGGAAG
GGTATCCAGAACCTACTTCTGAGTGAAAGCATAGAGCTAGCTGATTCAGA
AGCGGAACTTCTGGCTGCCACTTCGAACGCCGAGCCGCAGCATAATTTGC
TCGACGACCTCGACGAGGAACTATCCGAGTCATCGGTTCCCATTGATCTC
AGTGTCTCCTTGCATTTGCACTTGATTAAGCACAAGCAGCCCGTAGAGGA
GGAGGAAGAGCTCGAGCAGAAGGGTCGGGAAAATCAGCTTCTTAACCCGG
ATCTATCTGAATTCGATTCACTCAAAGACGAGGAGGACGACGAGTTCGCC
GAACTAGCCGCGGAATCGCTGACCAAAAAGGAAGAGGTTACTGTAGTTAG
CCAGGTTGTTTTGCCTGTCGCGCAGCTGCCCACTGAAGCCTTTGAAGCAG
GCAGTTGGGCCGAATTTGAAGAGCAATCGGGCCAAGAACCAGGAAAACCA
AAGCGTCCGCCACCACCAGTCCGTCCGCCTACAGGACCCCACATTGTGCC
CGGAGCGATTTACGTGTCGGAGGACGAGGAGGAGAATCCGGAAGACGACC
CCTTCAACACCAACTACGCAGAGCAAGTGATTAAGAAGACCACTGTACTT
GAGGAAGACGACGACTTTGATCCGCGTGCGGAGGAACACGCCACCGAGCC
ACCCTTTTTAGCAGCTCCACAACGCGATCTTCTCGCTGGTAGTGCTACCG
ACCTCAGTCAGGTGGTTCCCGCGCCCTTGGCGCCGACTTTAAGTGTCGAC
CAAGAGGCAGAGGACTTTGATCCCTTCGATACATCGGCCGTATCGGCTCT
GGTGCAACCCAAGTCCACGGAACTACGGTTTCTGGAGCGCGAGCTCCTTA
ACTATTCGGGCTTAGACGGAGTAACCCTCAAGCACTCCCTGAGTGACCAA
GACTTTGATCCACGAGCGGATCAAAAAGAACCAGCAGCACCGCAAGTAAA
ATTAGAGCAAAAAGAGACGGATTTCGATACAGCCCAACGAAAGTCCTCTC
TGAGTCTAAACATACAGGCCAAGAGTGTTGGCTTCCTGGTACCGGCATCA
GATCTTCTCGGAGCGGGTAATGAATTGGGAGCTAGTAAGAAGCCACTGAC
GCCGTACTACGCGCCATCTGACAATCGTTTGCAGGAGCGTGAACGAGAAG
CTGAGGACGTTGACCCCTTCGATACGTCACATGTGCCTGAGGCAAAACTC
AGCGATATAGAGCTGAAGCATATTGAAAAGGATTTGATCTCCGTACCCGC
CAATCTACGGCACAGCCTTTCCGACCCAGATTTTGATCCCCGTGCTCCAC
CTACTCCGGTTCCAGCTGAAGTCTTACTGGCCGTCGAGGAGAATATCAAC
ATCAAGGTCTTAACACCCGCTCAAGACCGAAAGAAGCTAACCAATTCAGG
TGGAAGCGGCAAATCGGAGGAGGACATCGACCCATTTGACACATCCATAG
CGGCAAATCTCCAGCCGGGCCAGACTGAGCTAAAACTTCTAGAAAACGAA
CTATTGCCGGAGACAAAGACTTTGGTGACTGACGTACTTGACGTGCAAAG
CGACGCTCAGGAGTTGGGCTTGGGCGACAAGGTCCTCACGCCTTCGACAC
ACTCAAGACCGTCCTTGCCCGCCCAGGATATAGACCCGTTTGACACTTCA
ATAGCGGAGAACCTAGCGCCCGGCGAAGCGGAGATAAAGCTGCTGGAAAG
CGAGCTGATCGAACGTTAAAAGCTTTCTAGACCAT
BS33359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stnA-RF | 2553 | CG12500-PF | 1..2553 | 17..2569 | 12765 | 100 | Plus |
| stnA-RE | 2553 | CG12500-PE | 1..2553 | 17..2569 | 12765 | 100 | Plus |
| stnA-RD | 2553 | CG12500-PD | 1..2553 | 17..2569 | 12765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stnA-RF | 8207 | CG12500-RF | 193..2745 | 17..2569 | 12765 | 100 | Plus |
| stnA-RE | 8332 | CG12500-RE | 255..2807 | 17..2569 | 12765 | 100 | Plus |
| stnA-RD | 8270 | CG12500-RD | 193..2745 | 17..2569 | 12765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22992727..22994005 | 2569..1291 | 6395 | 100 | Minus |
| X | 23542271 | X | 22994483..22995759 | 1293..17 | 6385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:05:12 has no hits.
BS33359.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:12 Download gff for
BS33359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stnB-RF | 66..2616 | 17..2567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:05 Download gff for
BS33359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stnA-RD | 193..2743 | 17..2567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:05 Download gff for
BS33359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22992729..22994003 | 1293..2567 | 100 | <- | Minus |
| X | 22994484..22995759 | 17..1292 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:12 Download gff for
BS33359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22394565..22395839 | 1293..2567 | 100 | <- | Minus |
| arm_X | 22396320..22397595 | 17..1292 | 100 | | Minus |
BS33359.pep Sequence
Translation from 16 to 2568
> BS33359.pep
MLKLPKGLKKKKKKSKKDQELFTEEELEQYKRDLKAKQEAAATKSDAGES
DGASSDVEAHHEPVAFNSGLGSGSSSSILNAQQQLSDQNQGAAGGDEEWA
KFKALTSGVDSILHKTQDELDRIKKESFYQRLPSAAEKKKQKEEEAARLE
AEQQEREKQRLGQIEAQRDKLAEAVVQLSESEEEAGDYEADDIFATDYIE
AITSGELQLAVVPDSPVLAEDGPDPFDTAYAEKVIVGADRAKGNKKLVSL
GAAVEVLSGRVDREHAVALANPKRKLRKGIQNLLLSESIELADSEAELLA
ATSNAEPQHNLLDDLDEELSESSVPIDLSVSLHLHLIKHKQPVEEEEELE
QKGRENQLLNPDLSEFDSLKDEEDDEFAELAAESLTKKEEVTVVSQVVLP
VAQLPTEAFEAGSWAEFEEQSGQEPGKPKRPPPPVRPPTGPHIVPGAIYV
SEDEEENPEDDPFNTNYAEQVIKKTTVLEEDDDFDPRAEEHATEPPFLAA
PQRDLLAGSATDLSQVVPAPLAPTLSVDQEAEDFDPFDTSAVSALVQPKS
TELRFLERELLNYSGLDGVTLKHSLSDQDFDPRADQKEPAAPQVKLEQKE
TDFDTAQRKSSLSLNIQAKSVGFLVPASDLLGAGNELGASKKPLTPYYAP
SDNRLQEREREAEDVDPFDTSHVPEAKLSDIELKHIEKDLISVPANLRHS
LSDPDFDPRAPPTPVPAEVLLAVEENINIKVLTPAQDRKKLTNSGGSGKS
EEDIDPFDTSIAANLQPGQTELKLLENELLPETKTLVTDVLDVQSDAQEL
GLGDKVLTPSTHSRPSLPAQDIDPFDTSIAENLAPGEAEIKLLESELIER
*
BS33359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stnA-PF | 850 | CG12500-PF | 1..850 | 1..850 | 4279 | 100 | Plus |
| stnA-PE | 850 | CG12500-PE | 1..850 | 1..850 | 4279 | 100 | Plus |
| stnA-PD | 850 | CG12500-PD | 1..850 | 1..850 | 4279 | 100 | Plus |
| stnA-PC | 850 | CG12500-PC | 1..850 | 1..850 | 4279 | 100 | Plus |
