BS33370.complete Sequence
4442 bp assembled on 2014-07-07
GenBank Submission: KX806224
> BS33370.complete
GAAGTTATCAGTCGACATGGCCCTATTGAATAAACTCTTCTTTCCGTCGG
CAACACCAACAACACCAGCGAATTTAGCGGCAGCGCCCACGCTGACCGCA
GCGTCCGCAGCAGCAGCAGCGCTAATTAATAGCCAAACAACAACAGCAAC
TACAGGAACAGCAACATCAGCTACTACAACAACATTGCCGGCACGTACAG
CTCACGCCTCTGCCGGCGTCGCTGCCACGGCCTCTGCTGGCAATAGTTCG
TCGTCCGCAAAAGCTACAAAACAAACTTCGCGAAATTATCTAAGTCGATT
CCCCTTCGAGGGCAGCCAGGTGCGAGTTCTGCTCTACAAAGAGGATGATA
CTCGGCGATTGCTCTTCGACTCGAATGCCCTCCAGAAGGTGATGCACAAG
GACCAATCGGCCACATCCGCATCCATATCATCGACCAGTACGAGTGGCGG
GGGAAAGTTCCTTAAGAATGAGAAGTACACATCGCTGCAGAATGGCAAGA
TTCCGTCGAAGTCACATTCCAGCAATGGTAGCAATTTCATCGAGGTGTGC
GCAGAGTACGGCTATAAGCACAATCGACCCTCGGGAGCCGACATCACGCC
GGTGGGCGAAATGGTGTTTGGCTCGTTGCCGATGTCCTTTTGCGGAACGG
CTCTGAAGGTGCACTGGCTGCCGGAACCGTCCAGAATCCTGTGCTCCCAG
GTCTACCTGACGCCCACCAGTAATGGAGGATCTGGCCACTCGCCGTACTC
TACGCTCTCCACGAATAGCCTGGCGACGCCGCGCACATCGATATGCAGCG
AGCATGGATCCATGGATGGTCTCTCGATGAACTCGTTCTCAATGCCGTTC
AGCGTGAGTGTAGGTCGGCAGATGAGCCTGACGCCACCGCTGGACGTTCC
GGCGACGCCGGCTGATCAGCAGTCACTGTCGATTCATTCGATCGACTCCA
GCGGTCCTCGATACTCATCAACATACAGCACTGCCACGGATTCGGGCTAT
TCGGCCAGTGGGAGTGGCAGTGCAGCTGGAGGGGATCAGTGGTCATATCA
GTACTCATCCACGCGCAGCAGTTTGGGCAGTGTCCTCTCGGATCAGTCGG
ATGCAATGCGGAAGCTGAGCATGGACTTGGCGTGCTATACGGGGTCTCCT
TACCTGGACGGATTTGCCAGCGATGGCTGCCTGCAGCGAAGAATCTCGCG
TAATTTGCGCACCTCCTTCGAGAACGAGCATTCCAAGAACGATTTTATCG
GCTTTCTTAGCGACAATTACGCATTGAATGGCCCTGTGGTAGCACCAGCA
GGAGGCGGAGCTGGAGGGGGCAGCGAAGGTGGTGGCATGGCTCCACCGCA
GTATCGACGAGCGAGCTATTGTGCGAATGAAACGCGAAGTAATCCGGAAA
TGGGCAGGAGGCAGGCCAATCTGCGGCGGCGGGCGAAACTGGGACTGGCC
GTGTGTATCTCGATGAGTGAGTCCTTCGAAGAGGAGATGGAGCTGTTTTG
TAGTGAGCATATTGCCTTGCTGGAATCTATGCTTAGTCGATTGAGAGCCA
GTACAGAACTGGCTTACATCAACCACAAGAACTTTCTGCAGATCATGTTC
CAGGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTTCACTGCCCC
GCGCATCAAGACACCTGTCTGGCTGAGCATCACCACCAGTGGCAGCAAGT
ACTCCAAGACTGTGGCCGAGAGATTCATCAAGGAGCTGTGCGACCTACTC
TCCTTCGCCGATACTAAGGACTCTAATTTTTTTATTAGCACCATGCTGAC
GGGAATTCTTACTCATCACCTCGGATGGGTAGCCACCGTGTCCGCCTTCA
ATAGCTCCGGTTCTAAACGATCGGAGTCGTCTGCCTCTGCAGCGGCCATT
GAGCAGAGGGCAAAGCTACTCCAAGTTGCCCAGAAGCATCCGTACAATGC
GCTGTGGGCCCAGCTCGGCGACCTTTATGGAGCCATCGGCATGCCGCCGA
AGCTGGCTCGCACCATTGTGTGTGGAGCAGAGAAGCTCTGGGTAGAGAAG
CTGCTAAACGTGCTCACATACTTTATTCGGTGCAGCGAAGTGCGGCGAGC
GGCCAAGCGGGAGGACTTTAACAAGCAGCTTATTAACGACCTTGCCGCCC
AGAGCCAGACGAAAAATCAAACGGGTACGCAGGAGAGGCACAAGAGTCCA
CCGACGCAGAAGCGCGGATTGAGCAGGGCGGCAACCTGCAAACAGAATCT
AAATGCAATTGCTGATGATGCGGACGATGAGAATGGCGAACTGAACATGT
ACGATAGGGACAACGAGGATGGGGACCCAGATGGTTTGGACTCTGGGTCC
CTGGACGCCAGCGATGGCATGCAGACTCTGAAAAAGAATGAGATTCCCAC
TGTGTTGGCCTTCCGAGACTCTCACTTTGTGCAGCAGGAGCTGCGTATCG
GAAACTATTTAATGGACACAGGTATTGACAAGAAGATGCTGCTGGCGCGG
CAGGCACAGCAGTACTTTCGTACTGGCAAAGACGGCCGGATCCGTTTGAC
AGTAACCACGCCGGATAACGTGGAGCTGTGCATGGAGGAGGAGCAGTCGA
GCGGCACTGGCTCCGTAAGTACAGGTTCCGTGGATGACGGTGCCATCGAG
GCCATCGACTATGAAGACAACGTGGAGGCACCTCCGAAAAAGAATTTCTT
TTGGAACATGGTGCCGGTAGCAGGTGTAAAGGAGGGACTGAGTCTAAGTG
ATTTGGCCAAGCTGCAGCAGGGCATTCGGATCATCAACCGCAAACTGGAG
CGACGCAGCAGCAGCTACTCCGTTGAGGGAAACCCCGATCAACAGCAGAG
CAAGACTGGAGAAACTGGAGTAGGTGACTTTGAGCCCCTGAGTCATGAGA
GACGAGCCTCGCATTTGTCACTCTCTGATTTGATAACGCAGAACAGCATG
GGCAAAAGCGATCGCATGACATGGGGCATTGAGCCCATAAAAGAAAACGT
TAGCCTGGAGGAGCAGATTCATTTTGATCACTGCCACAAGCTAATCGAGC
GTGAGCACGGCATCTGTCGACAAACATCCGCAGATAATGGCAACGGAGTA
GTCTTCGTCCTGGGCGACAATGAGCCACTGATCAACCTGAAAAAGAGCAG
TGAGGACCTGAGCGGAGATCAAGATTCTAAGCCAACTCTAATGCTGTGTG
CACAACATCAGCGCACCCACGACAGAAGCAAGCACTCGGGTATGAAGTTC
AATTTTGAACAGTATCCGCAAATAGCTACCAACTATATGAAGAACAAGAA
TCTATTGATGTCTAACTACGATCTGCTAATGGACAAGGTCACCAAACTGG
AGGCCAGTGAGGCAGCTGCCCTAAAGGGTAGCGATAGCACGGCTACACTA
GCTGCTAGCAGTAGCTCCACGGCTGCACTGCTTCCACCGACAACTCCAGT
GACTGCGAATAGCGATCGTTGCGTAGTTTGCAGCAGTGGCGTTGGCATAA
ATACCTCGGCCACCTGGAACCAAACACCTTCCAATGCCACCGAACTGGAA
TTCGAGACCGATGAAATGCATTGCTACAATCAAAGCGGGAACGGTAATGG
ATTCAGCTCAAAGGCTCTACAATCTGTAAACTCTGCGGCCTCCATAGACA
CGCTAAAGTCCTCTGTTGCAGTCGAACCACCAACTCCAACGATCCCAACC
CAAATGCAGACCACGTACATGCGCAAGCAGCAGCCCAAACGAGTGCCGTC
AGGACGCAGTTCCGTCTCCTCGGTGGCCGCCAAGTGTGCAGCGGTCAACG
TGTCTCAGCAGCTCTTGAAACTGCCTGTTCCGGGCATCAAGGAATTGCCG
CAGGACGACGAATCTCCAGGCGACCAGCTGCGTGCCGGCTTCATTCCCTC
GCTGCTGTTAAGCGTTAGCGATCATTACGTCTCAGACATGGTATTGCAGG
GTACTTGTGCTCCGCCCAATAAGTGGGAGATGCATCTGCGGGAGGATCTA
GCTCTGGCTGCGCGCTCAGCCTCGCTAATCTCGCAGCCGGCGGAGAACAT
TGCAATTGTGGCGGACATGGACAAGTGGGATGTACGGCTAATTTCATCTC
AGACGCAGCAGTTTCCTTATGCCGGTGGTCAGAGTTCTCCCGTGGGCATG
TCTCAGCTAGTGTCCAGCATGCTGGAAACCGTACAGGCCATGAATGCAGG
CGGCATACCAGCCTATGAGTGTTTGTCGTTCTTGGAGTCCAAGTTACAGG
AAATCTACCTACAATCGGAAACTTTGGCAGCATTCCTGCTTGAGACTGAT
CCGTGCCGACTGAGCGACATTACAAATCCACTGCAGTTGTCCGAAAATGA
TGTACCATTGCTGCTGTCAATAGCATATATTCACACGCCCAAGATCAGCC
GCAAGTGCGGCATCAGCTTCAGGTGAAAGCTTTCTAGACCAT
BS33370.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3764-RB | 4410 | CG3764-PB | 1..4410 | 17..4426 | 22050 | 100 | Plus |
| CG3764-RC | 4158 | CG3764-PC | 27..4158 | 295..4426 | 20660 | 100 | Plus |
| CG3764-RA | 4158 | CG3764-PA | 27..4158 | 295..4426 | 20660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3764-RB | 6001 | CG3764-RB | 900..5309 | 17..4426 | 22050 | 100 | Plus |
| CG3764-RC | 5092 | CG3764-RC | 269..4400 | 295..4426 | 20660 | 100 | Plus |
| CG3764-RA | 5195 | CG3764-RA | 372..4503 | 295..4426 | 20660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16996014..16998184 | 3950..1780 | 10855 | 100 | Minus |
| 3L | 28110227 | 3L | 16998525..16999549 | 1591..567 | 5125 | 100 | Minus |
| 3L | 28110227 | 3L | 17011389..17011666 | 294..17 | 1390 | 100 | Minus |
| 3L | 28110227 | 3L | 16999739..17000014 | 568..293 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 16995677..16995948 | 4219..3948 | 1360 | 100 | Minus |
| 3L | 28110227 | 3L | 16995409..16995617 | 4426..4218 | 1045 | 100 | Minus |
| 3L | 28110227 | 3L | 16998270..16998460 | 1779..1589 | 955 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 15:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2511 | 48..201 | 247 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2513 | 57..269 | 243 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6908 | 51..201 | 222 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6924 | 48..172 | 222 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6845 | 69..201 | 214 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6852 | 51..184 | 193 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6876 | 48..184 | 189 | 63.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1159 | 98..185 | 187 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2533 | 51..184 | 182 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6902 | 96..275 | 174 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2937 | 48..201 | 166 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2568 | 47..176 | 156 | 62.8 | Plus |
BS33370.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:51 Download gff for
BS33370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RB | 900..5308 | 17..4425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:04 Download gff for
BS33370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RB | 900..5308 | 17..4425 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:04 Download gff for
BS33370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16998270..16998457 | 1592..1779 | 100 | <- | Minus |
| 3L | 16995410..16995615 | 4220..4425 | 100 | <- | Minus |
| 3L | 16995677..16995946 | 3950..4219 | 100 | <- | Minus |
| 3L | 16996015..16998184 | 1780..3949 | 100 | <- | Minus |
| 3L | 16998525..16999547 | 569..1591 | 100 | <- | Minus |
| 3L | 16999739..17000012 | 295..568 | 100 | <- | Minus |
| 3L | 17011389..17011666 | 17..294 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:51 Download gff for
BS33370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16991370..16991557 | 1592..1779 | 100 | <- | Minus |
| arm_3L | 16988510..16988715 | 4220..4425 | 100 | <- | Minus |
| arm_3L | 16988777..16989046 | 3950..4219 | 100 | <- | Minus |
| arm_3L | 16989115..16991284 | 1780..3949 | 100 | <- | Minus |
| arm_3L | 16991625..16992647 | 569..1591 | 100 | <- | Minus |
| arm_3L | 16992839..16993112 | 295..568 | 100 | <- | Minus |
| arm_3L | 17004489..17004766 | 17..294 | 100 | | Minus |
BS33370.pep Sequence
Translation from 16 to 4425
> BS33370.pep
MALLNKLFFPSATPTTPANLAAAPTLTAASAAAAALINSQTTTATTGTAT
SATTTTLPARTAHASAGVAATASAGNSSSSAKATKQTSRNYLSRFPFEGS
QVRVLLYKEDDTRRLLFDSNALQKVMHKDQSATSASISSTSTSGGGKFLK
NEKYTSLQNGKIPSKSHSSNGSNFIEVCAEYGYKHNRPSGADITPVGEMV
FGSLPMSFCGTALKVHWLPEPSRILCSQVYLTPTSNGGSGHSPYSTLSTN
SLATPRTSICSEHGSMDGLSMNSFSMPFSVSVGRQMSLTPPLDVPATPAD
QQSLSIHSIDSSGPRYSSTYSTATDSGYSASGSGSAAGGDQWSYQYSSTR
SSLGSVLSDQSDAMRKLSMDLACYTGSPYLDGFASDGCLQRRISRNLRTS
FENEHSKNDFIGFLSDNYALNGPVVAPAGGGAGGGSEGGGMAPPQYRRAS
YCANETRSNPEMGRRQANLRRRAKLGLAVCISMSESFEEEMELFCSEHIA
LLESMLSRLRASTELAYINHKNFLQIMFQAWQDTQQWFSDLFTAPRIKTP
VWLSITTSGSKYSKTVAERFIKELCDLLSFADTKDSNFFISTMLTGILTH
HLGWVATVSAFNSSGSKRSESSASAAAIEQRAKLLQVAQKHPYNALWAQL
GDLYGAIGMPPKLARTIVCGAEKLWVEKLLNVLTYFIRCSEVRRAAKRED
FNKQLINDLAAQSQTKNQTGTQERHKSPPTQKRGLSRAATCKQNLNAIAD
DADDENGELNMYDRDNEDGDPDGLDSGSLDASDGMQTLKKNEIPTVLAFR
DSHFVQQELRIGNYLMDTGIDKKMLLARQAQQYFRTGKDGRIRLTVTTPD
NVELCMEEEQSSGTGSVSTGSVDDGAIEAIDYEDNVEAPPKKNFFWNMVP
VAGVKEGLSLSDLAKLQQGIRIINRKLERRSSSYSVEGNPDQQQSKTGET
GVGDFEPLSHERRASHLSLSDLITQNSMGKSDRMTWGIEPIKENVSLEEQ
IHFDHCHKLIEREHGICRQTSADNGNGVVFVLGDNEPLINLKKSSEDLSG
DQDSKPTLMLCAQHQRTHDRSKHSGMKFNFEQYPQIATNYMKNKNLLMSN
YDLLMDKVTKLEASEAAALKGSDSTATLAASSSSTAALLPPTTPVTANSD
RCVVCSSGVGINTSATWNQTPSNATELEFETDEMHCYNQSGNGNGFSSKA
LQSVNSAASIDTLKSSVAVEPPTPTIPTQMQTTYMRKQQPKRVPSGRSSV
SSVAAKCAAVNVSQQLLKLPVPGIKELPQDDESPGDQLRAGFIPSLLLSV
SDHYVSDMVLQGTCAPPNKWEMHLREDLALAARSASLISQPAENIAIVAD
MDKWDVRLISSQTQQFPYAGGQSSPVGMSQLVSSMLETVQAMNAGGIPAY
ECLSFLESKLQEIYLQSETLAAFLLETDPCRLSDITNPLQLSENDVPLLL
SIAYIHTPKISRKCGISFR*
BS33370.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3764-PB | 1469 | CG3764-PB | 1..1469 | 1..1469 | 7541 | 100 | Plus |
| CG3764-PC | 1385 | CG3764-PC | 9..1385 | 93..1469 | 7100 | 99.9 | Plus |
| CG3764-PA | 1385 | CG3764-PA | 9..1385 | 93..1469 | 7100 | 99.9 | Plus |
