BS33372.complete Sequence
2018 bp assembled on 2014-03-03
GenBank Submission: KX805402
> BS33372.complete
GAAGTTATCAGTCGACATGAGTATTGCCGACGTGGAGTACGAATATGTTG
TGTTAAAAATAAACGGTTACGATATTAGTCATTTGTCGAGGTATGAAGCG
GTTCAAAAGTTCCTTCAATCTAAAGAAACCCTTGTCGTAGAAATACGCAG
ACAGAAACACAATGCATTAGATTTAGAATTAAAACATGGCTCCAATGCCA
AAATATCAAAAGTGGACAATCCCGGAGAACTTTCTGTCCTAACTGACAAG
TCAGCAGAAGGGACGATCACAGCTGCCAGTGCCTCTCAACAAATAAATTG
CCCATCTTCAACATCGTTGAAAGAAATCGAGACGAAAACTCCTGTGGTTT
TAACTCTTCGGGCTAGAAGTCATGAGGATCGTTTGGGAAGTCTACAAGCC
GCATCGAAGGAAACTCAAACCCAATCTGTCGTTGGTACGGACGTTTTAAA
GGATAACGATTTGGTTAACACAATTACCGACAACTTCATAGAGCATGAAC
ACCATTTGTTCGAACAATGCCTGGAACCGGAAATCGACATTGAGGAAGAC
GATGATGACGAAGATATACATTTTGAGTATGCTAATACATTTCTGCCAGA
TGACTATACAAATGTAGTGGATAAATTGGATAAGGTTTTGTTAACTCACG
TCAAGTCTTTGGAAGAACTATCCAATAAATCCGCCATGCAATCTGACGAA
TGCTATCACATACCAGAAAAGAACTCATCTGATTCAAACGTTAAAATATC
TTCTTTGGCGAAAAATATCATTGAGCAATCTACCAAGTCCTGTAGTAAAA
TAAAGCTTCGACCGAATGCAAACTTGGATTATAAAAAAAAATTCAATCTA
CCTTTAAGCCAAGAAGAAGTTCATCTGCAATATGAGTACGATGAAAGCGA
GCACATTTACGAAACCATTCCAGAAGATTCTGAAAGTGAACCAGTGTATT
GTTCACCGTACCAACGTTCAAACGACAAGACGTCAATAGGTTGTTCATCT
CCAATAGCATCGAGACCGGCCGAATCATTAGAAAGAACAATGCAACAACA
AACTCAAAGAGTCGCCCAGTGGTTGGGCTTGAAGCCACAATACCAGAAAA
CTAGACAAACTCTAGTTGGTCGACCCCCGCCGTTGAAATTAGTACAGCAA
CCTACTTGTAGTCGTGTTTTTACATTGCGTAGCACCTTAACCAACACAAG
CGCATCCAGCAGTAGTGGAGTGGCATACAGCTCTTATGGACAAAATAATG
TTGTTACAGGGAACGCCGCGGCTCCTGGCGAAGAGGTCGATAACTCCTCA
AGTGCCTACAACACTGGTGATTCTAATAATAGCGCCTCCCCCCATCAAAA
TACTACAAATCCTGATGAAGCCATCGCCACTGGTCGCAAGCTAGATAGTA
CTGTTATTGATAGCCCCAATGATCATTTGGATGCCACAGGTGTAAGCACT
ATGTTGCTATTACCATTCGGCAAGTCTGGCCGTATTGGTCTCTGCTCTTC
CAATCTGCCTACAGCGTATGTCAGCGAGCGGTATACCAACGTTGGGTCTG
AAAATGAAATTCATCCACTTAAAAGCGACATTGAAATACTAAGAGTTAAA
CCAACTGATGATTCCTATAGTCATTGTCCACAGTTTAACGCCCCAAATTT
GAGTAGTTACCACTTTGTTAGTAGTCAAGAGGTTGCAAACAGATGTCATA
TTTCAACAAGCTTACAAAAAAATGCTACTTTGCTTAACGGTGAAAGTGCT
GAGGAAATACCCATGGTATGGAAGGTTAAAAGGCGACCAGATGGAACGCG
GTACATAGTAAAACGGCCAGTACGTAATCGACCCCAAGTTGCATTGCGGA
AAAATATGCGTTACAACGAGGTTACCACGACGGAAGACGATACAATATCT
GAAGTAAAAATAGGTCGTTATTGGACAAAAGAAGAACGAAAGCGGCATAT
CGAACGAGCTCGAGAGAAGAGACATCATCAGACGCAGCAACAGCAACAAT
AGAAGCTTTCTAGACCAT
BS33372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slip1-RB | 1986 | CG1783-PB | 1..1986 | 17..2002 | 9930 | 100 | Plus |
| Slip1-RA | 2304 | CG1783-PA | 847..2304 | 545..2002 | 7290 | 100 | Plus |
| Slip1-RC | 1884 | CG1783-PC | 847..1828 | 545..1526 | 4910 | 100 | Plus |
| Slip1-RA | 2304 | CG1783-PA | 1..532 | 17..548 | 2660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slip1-RB | 2500 | CG1783-RB | 81..2066 | 17..2002 | 9930 | 100 | Plus |
| Slip1-RA | 2818 | CG1783-RA | 927..2384 | 545..2002 | 7290 | 100 | Plus |
| Slip1-RC | 2663 | CG1783-RC | 927..1908 | 545..1526 | 4910 | 100 | Plus |
| Slip1-RA | 2818 | CG1783-RA | 81..612 | 17..548 | 2660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 665949..666932 | 543..1526 | 4920 | 100 | Plus |
| 4 | 1348131 | 4 | 663855..664341 | 59..545 | 2435 | 100 | Plus |
| 4 | 1348131 | 4 | 669128..669450 | 1680..2002 | 1615 | 100 | Plus |
| 4 | 1348131 | 4 | 668419..668576 | 1526..1683 | 790 | 100 | Plus |
| 4 | 1348131 | 4 | 667538..667795 | 680..945 | 650 | 84.6 | Plus |
| 4 | 1348131 | 4 | 667430..667539 | 543..652 | 415 | 91.8 | Plus |
| 4 | 1348131 | 4 | 663701..663746 | 17..62 | 215 | 97.8 | Plus |
Blast to na_te.dros performed 2014-11-28 15:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6803 | 1932..2006 | 123 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6761 | 1973..2006 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6782 | 1973..2006 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6836 | 1973..2006 | 116 | 82.4 | Plus |
BS33372.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:16 Download gff for
BS33372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slip1-RB | 81..2066 | 17..2002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:09 Download gff for
BS33372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slip1-RB | 81..2066 | 17..2002 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:09 Download gff for
BS33372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 663701..663742 | 17..58 | 100 | -> | Plus |
| 4 | 663855..664340 | 59..544 | 100 | -> | Plus |
| 4 | 665951..666932 | 545..1526 | 100 | -> | Plus |
| 4 | 668420..668574 | 1527..1681 | 100 | -> | Plus |
| 4 | 669130..669450 | 1682..2002 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:16 Download gff for
BS33372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 684327..684368 | 17..58 | 100 | -> | Plus |
| arm_4 | 684481..684966 | 59..544 | 100 | -> | Plus |
| arm_4 | 686577..687558 | 545..1526 | 100 | -> | Plus |
| arm_4 | 689046..689200 | 1527..1681 | 100 | -> | Plus |
| arm_4 | 689756..690076 | 1682..2002 | 100 | | Plus |
BS33372.pep Sequence
Translation from 16 to 2001
> BS33372.pep
MSIADVEYEYVVLKINGYDISHLSRYEAVQKFLQSKETLVVEIRRQKHNA
LDLELKHGSNAKISKVDNPGELSVLTDKSAEGTITAASASQQINCPSSTS
LKEIETKTPVVLTLRARSHEDRLGSLQAASKETQTQSVVGTDVLKDNDLV
NTITDNFIEHEHHLFEQCLEPEIDIEEDDDDEDIHFEYANTFLPDDYTNV
VDKLDKVLLTHVKSLEELSNKSAMQSDECYHIPEKNSSDSNVKISSLAKN
IIEQSTKSCSKIKLRPNANLDYKKKFNLPLSQEEVHLQYEYDESEHIYET
IPEDSESEPVYCSPYQRSNDKTSIGCSSPIASRPAESLERTMQQQTQRVA
QWLGLKPQYQKTRQTLVGRPPPLKLVQQPTCSRVFTLRSTLTNTSASSSS
GVAYSSYGQNNVVTGNAAAPGEEVDNSSSAYNTGDSNNSASPHQNTTNPD
EAIATGRKLDSTVIDSPNDHLDATGVSTMLLLPFGKSGRIGLCSSNLPTA
YVSERYTNVGSENEIHPLKSDIEILRVKPTDDSYSHCPQFNAPNLSSYHF
VSSQEVANRCHISTSLQKNATLLNGESAEEIPMVWKVKRRPDGTRYIVKR
PVRNRPQVALRKNMRYNEVTTTEDDTISEVKIGRYWTKEERKRHIERARE
KRHHQTQQQQQ*
BS33372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slip1-PB | 661 | CG1783-PB | 1..661 | 1..661 | 3412 | 100 | Plus |
| Slip1-PA | 767 | CG1783-PA | 283..767 | 177..661 | 2531 | 100 | Plus |
| Slip1-PC | 627 | CG1783-PC | 283..609 | 177..503 | 1695 | 100 | Plus |
| Slip1-PA | 767 | CG1783-PA | 1..177 | 1..177 | 886 | 100 | Plus |
| Slip1-PC | 627 | CG1783-PC | 1..177 | 1..177 | 886 | 100 | Plus |
