BS33376.complete Sequence
2726 bp assembled on 2014-03-03
GenBank Submission: KX800203
> BS33376.complete
GAAGTTATCAGTCGACATGATGATGGAGAACGGACTCTCCATGGAGTACG
GAGATGGCTACATGGAGCAGGAGGAGGAGTGGGAGCGCGAGGGCCTGCTC
GATCCTGCGTGGGAGAAGCAACAGAAGAAGACATTTACCGCCTGGTGTAA
CAGCCATTTGCGCAAGGCCGGTACAGCCATCGACAACATCGAGGAGGACT
TCCGCAACGGCCTCAAGCTGATGCTGCTGCTGGAGGTGATCTCCGGCGAG
ACGCTCCCCAAGCCCGATCGCGGCAAGATGCGCTTCCACAAGATCGCCAA
CGTGAACAAGGCTCTCGACTTCATCGCCTCCAAGGGCGTCCACCTGGTCT
CTATCGGCGCCGAGGAGATCGTCGATGGAAACTTGAAGATGACTCTGGGT
ATGATCTGGACGATTATCCTGCGCTTCGCCATTCAGGACATCTCCGTGGA
GGAGATGACCGCCAAGGAGGGTCTGCTGCTGTGGTGCCAGCGCAAGACGG
CTCCCTACAAGAACGTCAACGTACAGAACTTCCATCTGTCGTTCAAGGAT
GGTCTGGCCTTCTGCGCCCTTATCCATCGCCATCGTCCAGATCTAATCGA
CTACGCCAAGCTGTCCAAAGACAATCCTCTGGAGAATCTTAATACTGCCT
TCGATGTGGCCGAGAAGTACCTGGATATTCCGCGCATGTTGGATCCAGAT
GATCTCCAGAATACAGCTTTGCCCGATGAGCGGGCGGTGATGACGTATGT
GTCCTCGTACTATCACTGCTTCAGTGGCGCCCAAAAGGCGGAAACCGCTG
CCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGAGAACGAACGCCTC
ATGGAGGAGTACGAGCGTCTGGCCAGTGATTTGCTGGAGTGGATCCGTCG
CACCATGCCCTGGTTGAACTCGCGCCAGGCCGACAACTCGCTGGCAGGTG
TGCAGAAGAAGCTGGAGGAGTACCGCACCTACCGTCGCAAGCACAAGCCA
CCACGTGTGGAGCAGAAGGCCAAGCTGGAGACCAACTTCAACACGCTGCA
GACCAAGCTGCGCCTGTCCAACCGGCCCGCCTACCTGCCCACCGAGGGCA
AGACCGTGTCCGACATCTCCAACTCGTGGAAGGGCCTGGAGCTGGCCGAG
AAGGCCTTTGAGGAATGGCTGCTGGCCGAGACCATGCGCCTGGAGCGCCT
TGAACATCTGGCCCAGAAGTTCAAGCACAAGGCCGATGCCCACGAGGACT
GGACGCGTGGCAAGGAGGAGATGCTGCAGTCGCAGGACTTCCGCCAGTGC
AAGCTCAACGAGCTGAAGGCCCTAAAGAAGAAGCACGAAGCCTTTGAGTC
TGACCTGGCCGCCCACCAGGATCGTGTGGAGCAGATTGCCGCCATCGCCC
AGGAGCTTAACGTGAGCACTCTGGAGTACCATGACTGTGTGTCTGTGAAC
GCCAGGTGCCAGCGCATCTGCGACCAATGGGATCGCTTGGGTGCTCTTAC
CCAGCGCAGGCGCACCGCCTTAGACGAGGCCGAGCGAATCCTGGAGAAGA
TCGACATCTTGCATTTGGAGTTCGCGAAGCGTGCGGCGCCGTTCAACAAC
TGGCTGGATGGTACGCGCGAGGATCTTGTGGACATGTTTATTGTACACAC
CATGGAGGAAATCCAAGGCCTGATCCAGGCGCACGACCAGTTCAAGGCGA
CCCTGGGTGAGGCCGACAAGGAGTTCAACCTGATCGTGAACCTGGTCCGC
GAAGTGGAGTCGATTGTGAAGCAGCACCAGATCCCCGGCGGCCTAGAGAA
CCCCTACACCACCCTGACCGCCAACGACATGACGCGCAAGTGGAGCGACG
TCCGCCAACTGGTGCCCCAACGCGACCAGACTTTGGCCAACGAGCTGCGC
AAGCAACAGAACAACGAAATGCTCCGCCGTCAGTTTGCCGAGAAGGCCAA
CATTGTCGGCCCCTGGATCGAGCGGCAAATGGATGCTGTTACGGCCATCG
GTATGGGACTGCAGGGATCGCTGGAGGACCAACTGCACCGGCTCAAGGAG
TACGAGCAGGCCGTCTACGCCTACAAGCCGAACATTGAGGAGCTGGAGAA
GATCCACCAAGCGGTGCAGGAATCGATGATCTTCGAGAACCGATACACCA
ACTACACGATGGAAACGCTGCGCGTCGGCTGGGAGCAGCTGCTTACATCT
ATCAACCGCAACATCAACGAGGTGGAGAACCAGATTCTCACCCGCGACTC
CAAGGGCATTAGCCAGGAGCAGCTGAACGAATTCCGCAGCAGCTTCAACC
ACTTCGACAAGAACCGCACCGGCCGACTGTCGCCCGAGGAGTTCAAGTCG
TGCTTGGTCTCGTTGGGCTACTCGATTGGCAAGGATCGCCAGGGTGATTT
GGACTTCCAGCGCATCCTCGCCGTCGTCGATCCCAACAACACTGGCTACG
TGCACTTCGACGCCTTCCTCGACTTCATGACCCGCGAGAGCACCGATACC
GACACTGCCGAACAAGTCATCGACTCCTTCCGAATCCTGGCAGCCGACAA
GCCATACATTTTGCCCGACGAACTGCGTCGCGAGTTGCCGCCAGACCAGG
CCGAGTACTGCATCCAGCGCATGCCGCCCTATAAGGGACCCAACGGAGTG
CCCGGCGCCCTGGACTACATGTCCTTCAGCACAGCTCTCTACGGCGAGAC
CGACTTGTAAAAGCTTTCTAGACCAT
BS33376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn-RF | 2694 | CG4376-PF | 1..2694 | 17..2710 | 13470 | 100 | Plus |
| Actn-RA | 2688 | CG4376-PA | 1..2688 | 17..2710 | 13345 | 99.8 | Plus |
| Actn-RI | 2688 | CG4376-PI | 1..2688 | 17..2710 | 12880 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn-RF | 3877 | CG4376-RF | 399..3096 | 17..2714 | 13475 | 100 | Plus |
| Actn-RA | 3511 | CG4376-RA | 399..3090 | 17..2714 | 13350 | 99.7 | Plus |
| Actn-RI | 3516 | CG4376-RI | 404..3095 | 17..2714 | 12885 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2025775..2026911 | 2551..1415 | 5685 | 100 | Minus |
| X | 23542271 | X | 2030442..2030861 | 548..129 | 2100 | 100 | Minus |
| X | 23542271 | X | 2027520..2027871 | 1232..881 | 1760 | 100 | Minus |
| X | 23542271 | X | 2027284..2027464 | 1410..1230 | 905 | 100 | Minus |
| X | 23542271 | X | 2025537..2025701 | 2714..2550 | 810 | 99.4 | Minus |
| X | 23542271 | X | 2030215..2030370 | 701..546 | 780 | 100 | Minus |
| X | 23542271 | X | 2034955..2035068 | 130..17 | 570 | 100 | Minus |
| X | 23542271 | X | 2027935..2028033 | 880..782 | 480 | 99 | Minus |
| X | 23542271 | X | 2028664..2028751 | 788..701 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:05:35 has no hits.
BS33376.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:18 Download gff for
BS33376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RF | 399..3090 | 17..2708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:14 Download gff for
BS33376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RF | 399..3090 | 17..2708 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:14 Download gff for
BS33376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2025543..2025699 | 2552..2708 | 100 | <- | Minus |
| X | 2034955..2035068 | 17..130 | 100 | | Minus |
| X | 2025775..2026909 | 1417..2551 | 100 | <- | Minus |
| X | 2027278..2027462 | 1232..1416 | 98 | <- | Minus |
| X | 2027521..2027871 | 881..1231 | 100 | <- | Minus |
| X | 2027935..2028027 | 788..880 | 100 | <- | Minus |
| X | 2028665..2028750 | 702..787 | 100 | <- | Minus |
| X | 2030215..2030368 | 548..701 | 100 | <- | Minus |
| X | 2030443..2030859 | 131..547 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:18 Download gff for
BS33376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1922698..1922783 | 702..787 | 100 | <- | Minus |
| arm_X | 1924248..1924401 | 548..701 | 100 | <- | Minus |
| arm_X | 1919576..1919732 | 2552..2708 | 100 | <- | Minus |
| arm_X | 1919808..1920942 | 1417..2551 | 100 | <- | Minus |
| arm_X | 1921311..1921495 | 1232..1416 | 98 | <- | Minus |
| arm_X | 1921554..1921904 | 881..1231 | 100 | <- | Minus |
| arm_X | 1921968..1922060 | 788..880 | 100 | <- | Minus |
| arm_X | 1924476..1924892 | 131..547 | 100 | <- | Minus |
| arm_X | 1928988..1929101 | 17..130 | 100 | | Minus |
BS33376.pep Sequence
Translation from 16 to 2709
> BS33376.pep
MMMENGLSMEYGDGYMEQEEEWEREGLLDPAWEKQQKKTFTAWCNSHLRK
AGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKAL
DFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAK
EGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLS
KDNPLENLNTAFDVAEKYLDIPRMLDPDDLQNTALPDERAVMTYVSSYYH
CFSGAQKAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWL
NSRQADNSLAGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRL
SNRPAYLPTEGKTVSDISNSWKGLELAEKAFEEWLLAETMRLERLEHLAQ
KFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELKALKKKHEAFESDLAAH
QDRVEQIAAIAQELNVSTLEYHDCVSVNARCQRICDQWDRLGALTQRRRT
ALDEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQ
GLIQAHDQFKATLGEADKEFNLIVNLVREVESIVKQHQIPGGLENPYTTL
TANDMTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANIVGPW
IERQMDAVTAIGMGLQGSLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAV
QESMIFENRYTNYTMETLRVGWEQLLTSINRNINEVENQILTRDSKGISQ
EQLNEFRSSFNHFDKNRTGRLSPEEFKSCLVSLGYSIGKDRQGDLDFQRI
LAVVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAADKPYILP
DELRRELPPDQAEYCIQRMPPYKGPNGVPGALDYMSFSTALYGETDL*
BS33376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn-PF | 897 | CG4376-PF | 1..897 | 1..897 | 4686 | 100 | Plus |
| Actn-PA | 895 | CG4376-PA | 1..895 | 1..897 | 4665 | 99.8 | Plus |
| Actn-PI | 895 | CG4376-PI | 1..895 | 1..897 | 4623 | 98.9 | Plus |
| Actn-PD | 895 | CG4376-PD | 1..895 | 1..897 | 4623 | 98.9 | Plus |
| Actn-PB | 895 | CG4376-PB | 1..895 | 1..897 | 4623 | 98.9 | Plus |
