BS33377.complete Sequence
632 bp assembled on 2014-01-24
GenBank Submission: KX806130
> BS33377.complete
GAAGTTATCAGTCGACATGCTGCAACTTCAAAAGATGAATACTCTGCTGC
TGCTCTTGGCCATGATGCGCTGCATCTGTGCCACGCCCATAGCTCCTGCC
ACGCCCGATGGCGCCACGCCCATCGACGCCCGCGTCTCGGCCGCCGACTT
CGGAGCCCAGGATGCTTTCGATGCCGCCGACAGCTCCGCGGAATCCACCC
ACGCGCAGGCCAGCGACGCCGGGTTCAAGATCTCTCTCCTGCCCACTCCG
GCTAAAACGGCGGAATCGGTGAATCTAGAGCAGGAGGCCATTCCCTCGAA
GGTGCTGAGCGTGTACGACAACAGTCAAAAGAGGCTGGCCGATTTGGCGC
AGCCCGTTCCCATTTTGGACTCCATCAGTGAGCACGAGAAGTACGGCAAC
AACGGTGACATGTTCGACGGCATCTCGCGATCCATTGTCAACGGCTACGA
GGCCTTTTCCAACCTGCTCAACACCTTTATTCAGGTGAGGGAGTGCCGAA
ATTGCGACCATTGTGTTTGGTTTGTTTGTTTGCCCTGTTTCTTGGTCAAT
CCATTCGCACACACGTTGCATAATGGTCCCAGCGATGCACCGGCTCAGCA
GCCAAACAAAATTTAAAAGCTTTCTAGACCAT
BS33377.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5928-RC | 600 | CG5928-PC | 1..600 | 17..616 | 3000 | 100 | Plus |
| CG5928-RA | 552 | CG5928-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
| CG5928-RB | 237 | CG5928-PB | 1..213 | 17..229 | 1065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5928-RC | 1182 | CG5928-RC | 134..734 | 17..617 | 3005 | 100 | Plus |
| CG5928-RA | 806 | CG5928-RA | 134..601 | 17..484 | 2340 | 100 | Plus |
| CG5928-RB | 863 | CG5928-RB | 402..658 | 228..484 | 1285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6068549..6068816 | 350..617 | 1340 | 100 | Plus |
| X | 23542271 | X | 6068091..6068303 | 17..229 | 1065 | 100 | Plus |
| X | 23542271 | X | 6068359..6068483 | 228..352 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:55:49 has no hits.
BS33377.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:44 Download gff for
BS33377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5928-RC | 128..725 | 17..614 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:02 Download gff for
BS33377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5928-RC | 134..731 | 17..614 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:02 Download gff for
BS33377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6068091..6068303 | 17..229 | 100 | -> | Plus |
| X | 6068361..6068483 | 230..352 | 100 | -> | Plus |
| X | 6068552..6068813 | 353..614 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:44 Download gff for
BS33377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5962124..5962336 | 17..229 | 100 | -> | Plus |
| arm_X | 5962394..5962516 | 230..352 | 100 | -> | Plus |
| arm_X | 5962585..5962846 | 353..614 | 100 | | Plus |
BS33377.pep Sequence
Translation from 16 to 615
> BS33377.pep
MLQLQKMNTLLLLLAMMRCICATPIAPATPDGATPIDARVSAADFGAQDA
FDAADSSAESTHAQASDAGFKISLLPTPAKTAESVNLEQEAIPSKVLSVY
DNSQKRLADLAQPVPILDSISEHEKYGNNGDMFDGISRSIVNGYEAFSNL
LNTFIQVRECRNCDHCVWFVCLPCFLVNPFAHTLHNGPSDAPAQQPNKI*
BS33377.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5928-PC | 199 | CG5928-PC | 1..199 | 1..199 | 1040 | 100 | Plus |
| CG5928-PA | 183 | CG5928-PA | 1..156 | 1..156 | 782 | 100 | Plus |
| CG5928-PB | 78 | CG5928-PB | 1..73 | 1..73 | 363 | 98.6 | Plus |
